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Sample GSM142578 Query DataSets for GSM142578
Status Public on Sep 10, 2008
Title FL CD34+CD38+ cells, biological replicate 2
Sample type RNA
 
Source name fetal liver
Organism Homo sapiens
Characteristics CD34+CD38+ cells
Extracted molecule total RNA
Extraction protocol Rneasy colums (Qiagen)
Label biotin
Label protocol biotinylated cRNA
 
Hybridization protocol following fragmentation 10 ug cRNA was hybridized at 45 C for 16 hours with constant rotation at 60 rpm
Scan protocol Scanning was performed as described in the GeneChip Expression Analysis technical manual
Description Gene expression data from CD34+CD38- cells isolated from normal human Bone Marrow
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.
 
Submission date Oct 27, 2006
Last update date Mar 01, 2008
Contact name Arnolda de Nooij-van Dalen
Organization name LUMC
Department Hematology
Lab Experimental Hematology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333 ZA
Country Netherlands
 
Platform ID GPL96
Series (1)
GSE6146 Expression data from CD34+CD38- stem cells and more differentiated CD34+CD38+ progenitor cellsmbryo

Data table header descriptions
ID_REF
VALUE GCOS normalized signal
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 596.1 P 0.003210
AFFX-BioB-M_at 742.1 P 0.000127
AFFX-BioB-3_at 532.9 P 0.000340
AFFX-BioC-5_at 1465.1 P 0.000052
AFFX-BioC-3_at 1612.8 P 0.000052
AFFX-BioDn-5_at 2793.8 P 0.000044
AFFX-BioDn-3_at 8178.9 P 0.000095
AFFX-CreX-5_at 17644.7 P 0.000044
AFFX-CreX-3_at 24615.5 P 0.000044
AFFX-DapX-5_at 57.9 A 0.313708
AFFX-DapX-M_at 47.8 A 0.559359
AFFX-DapX-3_at 4.4 A 0.992384
AFFX-LysX-5_at 25.3 A 0.772364
AFFX-LysX-M_at 81.2 A 0.500000
AFFX-LysX-3_at 74.3 A 0.185131
AFFX-PheX-5_at 9.6 A 0.978098
AFFX-PheX-M_at 30.2 A 0.772364
AFFX-PheX-3_at 14.0 A 0.860518
AFFX-ThrX-5_at 31.5 A 0.659339
AFFX-ThrX-M_at 21.4 A 0.804734

Total number of rows: 22283

Table truncated, full table size 607 Kbytes.




Supplementary file Size Download File type/resource
GSM142578.CEL.gz 2.0 Mb (ftp)(http) CEL
GSM142578.EXP.gz 493 b (ftp)(http) EXP

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