|
| Status |
Public on Nov 07, 2014 |
| Title |
MAT1A knockout at 15 month age, peritumoral tissues, biological replicate 1 |
| Sample type |
RNA |
| |
|
| Source name |
Mouse liver peritumoral tissue, MAT1A knockout, hepatocellular carcinoma, 15 months
|
| Organism |
Mus musculus |
| Characteristics |
strain/background: C57B6SJL
genotype/variation: MAT1A knockout
age: 15 months
tissue: liver, peritumoral tissue
disease status: hepatocellular carcinoma
|
| Treatment protocol |
None
|
| Extracted molecule |
total RNA |
| Extraction protocol |
2-4 mg of liver. The tissue received was pulverized in mortar with presence of liquid nitrogen. Total RNA was then extracted using Qiagen’s RNeasy Mini kit recovering each sample in 35μl of water.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2μg of total RNA (Expression Analysis Technical Manual, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 15 μg of cRNA was hybridized on Affymetrix GeneChip® Mouse Genome 430A 2.0 Array. GeneChips were washed and stained in the Fluidics Station 450.
|
| Scan protocol |
GeneChips were scanned using the GeneChip® Scanner 3000 7G.
|
| Description |
MAT1A_NT1
Gene expression data from MAT1A knockout at 15 month, peritumoral tissue.
|
| Data processing |
The data were acquired with GCOS 1.4 instrument and processed using RMA normalization method.
|
| |
|
| Submission date |
Nov 06, 2014 |
| Last update date |
Nov 07, 2014 |
| Contact name |
Itziar Frades |
| Organization name |
Swedish University of Agricultural Sciences
|
| Department |
Plant Protection Biology
|
| Street address |
Sundsvägen 14
|
| City |
Alnarp |
| ZIP/Postal code |
SE-230 53 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL8321 |
| Series (2) |
| GSE63062 |
Expression data from GNMT and MAT1A knockout models that develop all the stages of non-alcoholic fatty liver disease including hepatocellular carcinoma [MAT1A_15months] |
| GSE63068 |
Integrative genomic signatures of hepatocellular carcinoma derived from nonalcoholic fatty liver disease |
|
