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Sample GSM16076 Query DataSets for GSM16076
Status Public on Feb 16, 2004
Title Untreated B cells 60min vs Anti-IgM and Terbutaline treated B cells 60min (set 3)
Sample type RNA
 
Channel 1
Source name Total RNA from untreated B cells cultured for 60min was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from B cells treated with Anti-IgM and Terbutaline for 60min was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was extracted from untreated B cells cultured for 60min.
Test total RNA was extracted from B cells treated with Anti-IgM and Terbutaline for 60min.
 
Submission date Feb 02, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
URL http://www.signaling-gateway.org
Organization name California Institute of Technology
Department Biology
Lab Alliance for Cellular Signaling Molecular Biology Laboratory
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL260
Series (2)
GSE1014 B cell response to CD40, Anti-IgM, ELC, IL4, terbutaline and lipopolysaccharide treatment
GSE1021 B cell response to Anti-IgM and terbutaline treatment

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 22459.4 60743 62120 4716.54 963.063 962 30.3437 81.7165 1818.3 1849 89.1778 1768.29 1765.5 81.065 -2 0
2 64.4682 1131.19 1132 72.0331 981.48 978 41.8354 64.4848 1781.81 1819 187.471 1746.31 1744.5 84.1063 0.00011173 0
3 89.0679 1024.5 994 73.9904 1048.58 1015.5 88.2467 28.3041 1853.92 1867 57.3578 1821.96 1810.5 97.5014 0 0
4 53.5614 992.107 990.5 30.0424 1001.28 991 53.0675 10.2111 1680.32 1685 94.5112 1802.5 1796 77.1862 0 0
5 17.5026 1023.56 1029 33.8109 1001.4 999.5 31.1631 42.2313 1782.22 1774 78.296 1791.18 1794 74.8175 0.382531 0
6 190.94 1500.93 1518 134.695 1010.45 1009 32.0415 130.911 2023.32 2003.5 152.339 1796.73 1795 65.5685 -0.163921 0
7 28.501 992.682 992.5 31.0244 998.109 998 28.2383 22.9091 1785.36 1782.5 65.9549 1799.36 1801 74.3804 0 0
8 31.3767 999.111 992 28.7607 998.5 999 31.0874 23.513 1776.3 1758 79.5424 1785.15 1784 76.0058 0 0
9 1331.19 4555.2 4554 206.475 1004.72 1005 32.524 1300.59 5697.2 5698 381.205 1782.95 1779 73.1814 -0.0101022 -0.033558782000171108
10 537.222 2438.72 2207 533.942 999.875 1000 33.7761 1028.19 4870.56 4741 1263.15 1825.06 1822 96.7095 0.281918 0.93651132465445552
11 36.1905 1011.19 1006 23.984 1005.44 1006 35.8569 28.8457 1871.85 1871 76.9499 1835.27 1831 83.5297 0 0
12 38.3738 1002.54 991 35.3516 1015.06 1015 38.02 19.1114 1821.67 1824 57.0741 1868.02 1858.5 83.005 0 0
13 33.156 1030.87 1033 27.9745 1033.83 1031.5 32.8503 22.58 1905.22 1903 65.2059 1922.02 1926.5 76.8874 0 0
14 875.977 3390.87 3386 168.564 1046.46 1044.5 32.4227 1313.95 5942.91 6059 456.139 1996.84 1992.5 78.9885 0.176085 0.58494170858824124
15 1344.36 4630.43 4539 3109.94 1054.96 1049.5 33.9355 1897.75 7839.64 7202.5 5269.01 2015.15 2015 80.5553 0.149724 0
16 1693.76 5542.65 6203.5 1898.62 1048.74 1044 34.486 2087.48 8445.35 9298.5 2881.43 2004.05 2004 79.3362 0.0907685 0.30152643028078369
17 281.556 1795.48 1312 818.354 1054.78 1056 32.977 328.615 2805.11 2252 1000.3 1950.86 1959 91.2192 0.0671232 0
18 148.469 1438.07 1438.5 91.9432 1060.53 1060 34.2555 122.248 2118.82 2089.5 126.584 1915.33 1911 97.7176 -0.0843954 -0.28035545033925696
19 4547.01 13027.4 13521.5 1776.76 1057.16 1056 31.3971 5719.98 20086.5 20595 3257.15 1945.36 1945 81.7726 0.0996682 0.33109059374685257
20 2043.65 6483.35 6422 923.625 1059.42 1059 32.6194 1558.25 6708.46 6600 823.605 1955.95 1969 82.2355 -0.11777 -0.39122347173488459

Total number of rows: 16273

Table truncated, full table size 2070 Kbytes.




Supplementary data files not provided
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