NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL260 Query DataSets for GPL260
Status Public on Mar 06, 2003
Title Caltech 16K cDNA Mouse Array
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Mus musculus
 
Description The 16K mouse cDNAs probes used in this microarray were designed using sequence information gathered from RIKEN FANTOM cDNA library.
Probes can be 0.5 to 3 kb in length where about 60% of the probes represent full length transcripts.
The PCR products were inkjet-printed on the array by Agilent Technologies (Palo Alto, CA).
 
Citation(s) 16081620
Submission date Mar 06, 2003
Last update date Mar 24, 2006
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Samples (641) GSM4656, GSM4657, GSM4658, GSM4659, GSM4661, GSM4662 
Series (48)
GSE330 Spleen vs Liver - cDNA - Single
GSE331 Spleen vs Liver - cDNA - Double
GSE332 UMRR vs Spleen

Data table header descriptions
ID Feature number which corresponds to the order of genes on the array
ROW Row-within array
COLUMN Column-within array
UNIGENE UniGene ID
CONTROL_TYPE Designate place holders on the array
GENE Gene Name
GB_ACC GenBank Accession number
SPOT_ID

Data table
ID ROW COLUMN UNIGENE CONTROL_TYPE GENE GB_ACC SPOT_ID
1 1 1 1 Fiducial Fiducial
2 1 2 1 Agilent QC Agilent QC
3 1 3 -20000 Agilent_BLANK Agilent_BLANK
4 1 4 1 Agilent QC Agilent QC
5 1 5 -20000 Agilent_BLANK Agilent_BLANK
6 1 6 1 Agilent QC Agilent QC
7 1 7 -20000 Agilent_BLANK Agilent_BLANK
8 1 8 41415 0 ActA binding protein 3 AK014712
9 1 9 22435 0 golgi phosphoprotein 3 AK014644
10 1 10 140158 0 cytochrome P450, 51 NM_020010
11 1 11 78551 0 testis expressed gene 21 AK016448
12 1 12 34044 0 decay accelerating factor 2 AK019553
13 1 13 4379 0 pericentrin AK015109
14 1 14 22891 0 coatomer protein complex, subunit gamma 2, antisense 2 AK018238
15 1 15 20950 0 DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide, Y chromosome AK020213
16 1 16 1011 0 nuclear receptor coactivator 3 AK021229
17 1 17 4078 0 antigen identified by monoclonal antibody Ki 67 X82786
18 1 18 116904 0 solute carrier family 26, member 3 AK018566
19 1 19 23834 0 ESTs, Weakly similar to AF144731 1 putative splicing factor YT521-B [R.norvegicus] BF681837
20 1 20 22478 0 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily f, member 1 AK003972

Total number of rows: 16273

Table truncated, full table size 894 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap