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Sample GSM183342 Query DataSets for GSM183342
Status Public on Aug 24, 2007
Title SKVCR 2.0 - replicate 1
Sample type RNA
 
Source name Ovarian tumor cell line - vincristine-resistant derivative
Organism Homo sapiens
Characteristics SKVCR 2.0 is a vincristine-resistant derivative of SKOV3 capable of growing in media with 2.0 µg/ml vincristine drug.
Extracted molecule total RNA
Extraction protocol RNA was extracted from isolated cells using the RNeasy Mini Kit (Qiagen) and re-dissolved in RNase-free water.
Label Biotin.
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol Manufacturer's protocols.
Scan protocol Manufacturer's protocols.
Description Keyword = vincristine
Keyword = drug resistant
Keyword = ovarian
Keyword = MAS5
Data processing MAS5.
 
Submission date Apr 19, 2007
Last update date Aug 28, 2018
Contact name T Buys
Organization name British Columbia Cancer Research Centre
Department Cancer Genetics and Developmental Biology
Lab Wan Lam Lab
Street address 675 W.10th Avenue
City Vancouver
State/province BC
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL570
Series (1)
GSE7556 Genetic changes in the evolution of multidrug resistance for cultured human ovarian cancer cells
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE A quantitative measure of the relative abundance of a transcript. Calculated by MAS5.
ABS_CALL A qualititative measurement indicating if a given transcript is detected (Present), not detected (Absent), or marginally detected (Marginal). Calculated by MAS5.
DETECTION P-VALUE The detection p-value calculated by MAS5.

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 149.1 P 0.000959
1053_at 194.3 P 0.000322
117_at 7.2 A 0.204022
121_at 274 P 0.000219
1255_g_at 6.5 A 0.267463
1294_at 19.2 A 0.162935
1316_at 28.1 P 0.006532
1320_at 9.4 A 0.458816
1405_i_at 1.6 A 0.911443
1431_at 4 A 0.621816
1438_at 2.1 A 0.795978
1487_at 120.5 P 0.02786
1494_f_at 23.2 M 0.060419
1552256_a_at 156.6 P 0.023926
1552257_a_at 338.7 P 0.000244
1552258_at 15 A 0.366211
1552261_at 1.4 A 0.466064
1552263_at 45.1 P 0.00293
1552264_a_at 111.8 P 0.000244
1552266_at 5.8 A 0.26709

Total number of rows: 54673

Table truncated, full table size 1397 Kbytes.




Supplementary file Size Download File type/resource
GSM183342.CEL.gz 7.8 Mb (ftp)(http) CEL
GSM183342.EXP.gz 518 b (ftp)(http) EXP

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