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Sample GSM1908291 Query DataSets for GSM1908291
Status Public on Dec 01, 2015
Title DLBCL_DS-66_Specimen USC09
Sample type genomic
 
Channel 1
Source name Human DLBCL specimen
Organism Homo sapiens
Characteristics disease state: diffuse large B-cell lymphoma
treatment: R-CHOP or R-CHOP like immuno-chemo therapy
Extracted molecule genomic DNA
Extraction protocol Extraction of genomic DNA was performed using Qiagen DNeasy Blood and Tissue kit according to the manufacturer's instructions.
Label Cy5
Label protocol Genomic DNA samples were labeled using the Agilent Genomic DNA Enzymatic Labeling Kit, according to the manufacturer's protocol, except that 1μg of DNA was used per 25μl labeling reaction mix.
 
Channel 2
Source name Reference human genome DNA equimixture of normal male and normal female (Promega).
Organism Homo sapiens
Characteristics sample type: reference
Extracted molecule genomic DNA
Extraction protocol Extraction of genomic DNA was performed using Qiagen DNeasy Blood and Tissue kit according to the manufacturer's instructions.
Label Cy3
Label protocol Genomic DNA samples were labeled using the Agilent Genomic DNA Enzymatic Labeling Kit, according to the manufacturer's protocol, except that 1μg of DNA was used per 25μl labeling reaction mix.
 
 
Hybridization protocol Oligoarray hybridization buffer, block (both from Agilent In Situ Hybridization Kit Plus), and Cot-1 DNA (Life Technologies) were added to each sample prior to application to microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization for 24 hours, slides were washed sequentially as described by the manufacturer.
Scan protocol Scanned on an Agilent Technologies Scanner G2505B.
Description DLBCL_DS-66_Specimen USC09 as test DNA and Promega normal DNA as reference
Data processing Data extraction was performed using Feature Extraction Version 10.7.3.1 (Agilent Technologies).
 
Submission date Oct 14, 2015
Last update date Dec 01, 2015
Contact name Jane Houldsworth
E-mail(s) [email protected]
Phone 2015289171
Organization name Cancer Genetics, Inc.
Street address 201 Route 17 North
City Rutherford
State/province NJ
ZIP/Postal code 07070
Country USA
 
Platform ID GPL21031
Series (1)
GSE74025 Cross-Platform Assessment of Genomic Imbalance Confirms the Clinical Relevance of Genomic Complexity and Reveals Loci with Potential Pathogenic Roles in Diffuse Large B-Cell Lymphoma

Data table header descriptions
ID_REF
VALUE log2 Cy5/Cy3

Data table
ID_REF VALUE
A_16_P15000916 1.297461307
A_16_P15003416 0.054353971
A_16_P21686635 -0.206023623
A_16_P21686737 0.27668839
A_16_P30009023 0.09836484
A_18_P10003549 0.018243566
A_16_P00000776 0.356083927
A_18_P10003754 -0.397250115
A_16_P15003873 -0.31733194
A_16_P15003937 0.27235741
A_16_P00000964 -0.936880278
A_16_P30010422 -0.033066037
A_16_P30010606 -0.436122633
A_16_P35004752 0.34268369
A_16_P15004272 0.517938033
A_16_P00001153 -0.770095203
A_16_P00001230 -0.304723635
A_18_P10004493 -0.802893454
A_18_P10005642 0.514700091
A_16_P00001417 0.294015716

Total number of rows: 23683

Table truncated, full table size 639 Kbytes.




Supplementary file Size Download File type/resource
GSM1908291_USC_09_SG13284320_256689910033_S001_CGH_105_Dec08_1_1.txt.gz 5.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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