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Platform GPL21031 Query DataSets for GPL21031
Status Public on Dec 01, 2015
Title Agilent-066899 G4126A
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16066899 or 2566899

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Oct 14, 2015
Last update date Dec 01, 2015
Contact name Jane Houldsworth
E-mail(s) [email protected]
Phone 2015289171
Organization name Cancer Genetics, Inc.
Street address 201 Route 17 North
City Rutherford
State/province NJ
ZIP/Postal code 07070
Country USA
 
Samples (66) GSM1908287, GSM1908288, GSM1908289, GSM1908290, GSM1908291, GSM1908292 
Series (1)
GSE74025 Cross-Platform Assessment of Genomic Imbalance Confirms the Clinical Relevance of Genomic Complexity and Reveals Loci with Potential Pathogenic Roles in Diffuse Large B-Cell Lymphoma

Data table header descriptions
ID Agilent feature number
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SPOT_ID Spot identifier

Data table
ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SPOT_ID
A_16_P21218340 FALSE BC040319 gb|BC040319|gb|BC040319 chr21:26373084-26373143 gb|Homo sapiens hypothetical protein LOC339622, mRNA (cDNA clone IMAGE:4836841).
A_18_P13869917 FALSE BC051441 gb|BC051441|gb|BC051441|gb|BC028044 chr21:20110035-20110094 gb|Homo sapiens cDNA clone IMAGE:6161060, partial cds.
A_16_P21031423 FALSE HQ258093 gb|HQ258093|gb|HQ258093 chr19:51617663-51617722
A_16_P19363278 FALSE NM_000019 entg|ACAT1 entg|acetyl-CoA acetyltransferase 1 ref|NM_000019 chr11:108005795-108005854 entg|acetyl-CoA acetyltransferase 1
A_14_P117388 FALSE NM_000024 entg|ADRB2 entg|adrenoceptor beta 2, surface ref|NM_000024 chr5:148207976-148208032 entg|adrenoceptor beta 2, surface
A_16_P00151888 FALSE NM_000036 entg|AMPD1 entg|adenosine monophosphate deaminase 1 ref|NM_000036|ref|NM_001172626 chr1:115217021-115217080 entg|adenosine monophosphate deaminase 1
A_16_P19363493 FALSE NM_000051 entg|ATM entg|ataxia telangiectasia mutated ref|NM_000051 chr11:108102836-108102895 entg|ataxia telangiectasia mutated
A_18_P11234465 FALSE NM_000051 entg|ATM entg|ataxia telangiectasia mutated ref|NM_000051 chr11:108130266-108130325 entg|ataxia telangiectasia mutated
A_16_P39486768 FALSE NM_000051 entg|ATM entg|ataxia telangiectasia mutated ref|NM_000051 chr11:108172844-108172903 entg|ataxia telangiectasia mutated
A_18_P19006806 FALSE NM_000051 entg|ATM entg|ataxia telangiectasia mutated ref|NM_000051 chr11:108225441-108225500 entg|ataxia telangiectasia mutated
A_16_P19814651 FALSE NM_000053 entg|ATP7B entg|ATPase, Cu++ transporting, beta polypeptide ref|NM_000053|ref|NM_001005918|ref|NM_001243182 chr13:52523783-52523842 entg|ATPase, Cu++ transporting, beta polypeptide
A_18_P19667544 FALSE NM_000053 entg|ATP7B entg|ATPase, Cu++ transporting, beta polypeptide ref|NM_000053|ref|NM_001005918|ref|NM_001243182 chr13:52565251-52565310 entg|ATPase, Cu++ transporting, beta polypeptide
A_16_P16485475 FALSE NM_000055 entg|BCHE entg|butyrylcholinesterase ref|NM_000055 chr3:165493838-165493897 entg|butyrylcholinesterase
A_16_P58619589 FALSE NM_000055 entg|BCHE entg|butyrylcholinesterase ref|NM_000055 chr3:165542238-165542297 entg|butyrylcholinesterase
A_16_P20344959 FALSE NM_000057 entg|BLM entg|Bloom syndrome, RecQ helicase-like ref|NM_000057 chr15:91267562-91267621 entg|Bloom syndrome, RecQ helicase-like
A_16_P57714698 FALSE NM_000064 entg|C3 entg|complement component 3 ref|NM_000064 chr19:6680488-6680547 entg|complement component 3
A_16_P20949954 FALSE NM_000064 entg|C3 entg|complement component 3 ref|NM_000064 chr19:6705206-6705265 entg|complement component 3
A_16_P18381054 FALSE NM_000067 entg|CA2 entg|carbonic anhydrase II ref|NM_000067 chr8:86391432-86391491 entg|carbonic anhydrase II
A_14_P112158 FALSE NM_000067 entg|CA2 entg|carbonic anhydrase II ref|NM_000067 chr8:86393102-86393161 entg|carbonic anhydrase II
A_16_P03425624 FALSE NM_000068 entg|CACNA1A entg|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit ref|NM_000068|ref|NM_001127221|ref|NM_001127222|ref|NM_001174080|ref|NM_023035 chr19:13528819-13528878 entg|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit

Total number of rows: 23683

Table truncated, full table size 2652 Kbytes.




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