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Status
Public on Dec 01, 2015
Title
Agilent-066899 G4126A
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16066899 or 2566899 Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Oct 14, 2015
Last update date
Dec 01, 2015
Contact name
Jane Houldsworth
E-mail(s)
[email protected]
Phone
2015289171
Organization name
Cancer Genetics, Inc.
Street address
201 Route 17 North
City
Rutherford
State/province
NJ
ZIP/Postal code
07070
Country
USA
Samples (66)
GSM1908287 , GSM1908288 , GSM1908289 , GSM1908290 , GSM1908291 , GSM1908292
GSM1908293 ,
GSM1908294 ,
GSM1908295 ,
GSM1908296 ,
GSM1908297 ,
GSM1908298 ,
GSM1908299 ,
GSM1908300 ,
GSM1908301 ,
GSM1908302 ,
GSM1908303 ,
GSM1908304 ,
GSM1908305 ,
GSM1908306 ,
GSM1908307 ,
GSM1908308 ,
GSM1908309 ,
GSM1908310 ,
GSM1908311 ,
GSM1908312 ,
GSM1908313 ,
GSM1908314 ,
GSM1908315 ,
GSM1908316 ,
GSM1908317 ,
GSM1908318 ,
GSM1908319 ,
GSM1908320 ,
GSM1908321 ,
GSM1908322 ,
GSM1908323 ,
GSM1908324 ,
GSM1908325 ,
GSM1908326 ,
GSM1908327 ,
GSM1908328 ,
GSM1908329 ,
GSM1908330 ,
GSM1908331 ,
GSM1908332 ,
GSM1908333 ,
GSM1908334 ,
GSM1908335 ,
GSM1908336 ,
GSM1908337 ,
GSM1908338 ,
GSM1908339 ,
GSM1908340 ,
GSM1908341 ,
GSM1908342 ,
GSM1908343 ,
GSM1908344 ,
GSM1908345 ,
GSM1908346 ,
GSM1908347 ,
GSM1908348 ,
GSM1908349 ,
GSM1908350 ,
GSM1908351 ,
GSM1908352
Series (1)
GSE74025
Cross-Platform Assessment of Genomic Imbalance Confirms the Clinical Relevance of Genomic Complexity and Reveals Loci with Potential Pathogenic Roles in Diffuse Large B-Cell Lymphoma
Data table header descriptions
ID
Agilent feature number
CONTROL_TYPE
Control type
GB_ACC
GenBankAccession
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
SPOT_ID
Spot identifier
Data table
ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
DESCRIPTION
SPOT_ID
A_16_P21218340
FALSE
BC040319
gb|BC040319|gb|BC040319
chr21:26373084-26373143
gb|Homo sapiens hypothetical protein LOC339622, mRNA (cDNA clone IMAGE:4836841).
A_18_P13869917
FALSE
BC051441
gb|BC051441|gb|BC051441|gb|BC028044
chr21:20110035-20110094
gb|Homo sapiens cDNA clone IMAGE:6161060, partial cds.
A_16_P21031423
FALSE
HQ258093
gb|HQ258093|gb|HQ258093
chr19:51617663-51617722
A_16_P19363278
FALSE
NM_000019
entg|ACAT1
entg|acetyl-CoA acetyltransferase 1
ref|NM_000019
chr11:108005795-108005854
entg|acetyl-CoA acetyltransferase 1
A_14_P117388
FALSE
NM_000024
entg|ADRB2
entg|adrenoceptor beta 2, surface
ref|NM_000024
chr5:148207976-148208032
entg|adrenoceptor beta 2, surface
A_16_P00151888
FALSE
NM_000036
entg|AMPD1
entg|adenosine monophosphate deaminase 1
ref|NM_000036|ref|NM_001172626
chr1:115217021-115217080
entg|adenosine monophosphate deaminase 1
A_16_P19363493
FALSE
NM_000051
entg|ATM
entg|ataxia telangiectasia mutated
ref|NM_000051
chr11:108102836-108102895
entg|ataxia telangiectasia mutated
A_18_P11234465
FALSE
NM_000051
entg|ATM
entg|ataxia telangiectasia mutated
ref|NM_000051
chr11:108130266-108130325
entg|ataxia telangiectasia mutated
A_16_P39486768
FALSE
NM_000051
entg|ATM
entg|ataxia telangiectasia mutated
ref|NM_000051
chr11:108172844-108172903
entg|ataxia telangiectasia mutated
A_18_P19006806
FALSE
NM_000051
entg|ATM
entg|ataxia telangiectasia mutated
ref|NM_000051
chr11:108225441-108225500
entg|ataxia telangiectasia mutated
A_16_P19814651
FALSE
NM_000053
entg|ATP7B
entg|ATPase, Cu++ transporting, beta polypeptide
ref|NM_000053|ref|NM_001005918|ref|NM_001243182
chr13:52523783-52523842
entg|ATPase, Cu++ transporting, beta polypeptide
A_18_P19667544
FALSE
NM_000053
entg|ATP7B
entg|ATPase, Cu++ transporting, beta polypeptide
ref|NM_000053|ref|NM_001005918|ref|NM_001243182
chr13:52565251-52565310
entg|ATPase, Cu++ transporting, beta polypeptide
A_16_P16485475
FALSE
NM_000055
entg|BCHE
entg|butyrylcholinesterase
ref|NM_000055
chr3:165493838-165493897
entg|butyrylcholinesterase
A_16_P58619589
FALSE
NM_000055
entg|BCHE
entg|butyrylcholinesterase
ref|NM_000055
chr3:165542238-165542297
entg|butyrylcholinesterase
A_16_P20344959
FALSE
NM_000057
entg|BLM
entg|Bloom syndrome, RecQ helicase-like
ref|NM_000057
chr15:91267562-91267621
entg|Bloom syndrome, RecQ helicase-like
A_16_P57714698
FALSE
NM_000064
entg|C3
entg|complement component 3
ref|NM_000064
chr19:6680488-6680547
entg|complement component 3
A_16_P20949954
FALSE
NM_000064
entg|C3
entg|complement component 3
ref|NM_000064
chr19:6705206-6705265
entg|complement component 3
A_16_P18381054
FALSE
NM_000067
entg|CA2
entg|carbonic anhydrase II
ref|NM_000067
chr8:86391432-86391491
entg|carbonic anhydrase II
A_14_P112158
FALSE
NM_000067
entg|CA2
entg|carbonic anhydrase II
ref|NM_000067
chr8:86393102-86393161
entg|carbonic anhydrase II
A_16_P03425624
FALSE
NM_000068
entg|CACNA1A
entg|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
ref|NM_000068|ref|NM_001127221|ref|NM_001127222|ref|NM_001174080|ref|NM_023035
chr19:13528819-13528878
entg|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
Total number of rows: 23683 Table truncated, full table size 2652 Kbytes .
Supplementary data files not provided