NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1934699 Query DataSets for GSM1934699
Status Public on Nov 10, 2015
Title LGWU102569-1036382WU
Sample type RNA
 
Source name Breast Tumor CALGB 102569
Organism Homo sapiens
Characteristics gender: female
tissue type: Breast Tumor
fixative: Formalin-Fixed Paraffin Embedded Tissue
Biomaterial provider CALGB
Treatment protocol The CALGB (Alliance) 9741 adjuvant node-positive breast cancer trial randomized treatment with doxorubicin (A), cyclophosphamide (C), and paclitaxel (T) using a 2x2 factorial design. The two factors were (i) 2-weekly (dose dense; DD) versus 3-weekly administration and (ii) sequential (A→T→C) versus concurrent (AC→T) chemotherapy.
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol http://www.nanostring.com/media/pdf/TN_Using_nCounter_with_FFPE_Samples.pdf
Label NA
Label protocol See manufacturer's website http://www.nanostring.com for procedures
 
Hybridization protocol See manufacturer's website http://www.nanostring.com for procedures.
Scan protocol See manufacturer's website http://www.nanostring.com for procedures. Digital Analyzer was set to scan at 1155 FOV (fields of view)
Data processing See manufacturer's website http://www.nanostring.com. Raw data was background subtracted and normalized to the geometric mean of the housekeepers.
 
Submission date Nov 09, 2015
Last update date Nov 10, 2015
Contact name Sherri R Davies
E-mail(s) [email protected]
Phone 3147473073
Organization name Washington University
Street address 4950 Parkview Place
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL21114
Series (1)
GSE74821 Gene expression analysis of CALGB 9741 patient tumor samples using the nCounter RUO-PAM50 signature

Data table header descriptions
ID_REF
VALUE nCounter signal intensity (log2 transformed)

Data table
ID_REF VALUE
1 5.136639153
2 -2.884401996
3 -0.252241763
4 -1.859513023
5 -2.992089866
6 -1.199234513
7 -1.658666132
8 -1.082316761
9 -4.176514437
10 -1.871074465
11 -2.723056719
12 -5.006589435
13 -3.168340505
14 -2.293871387
15 -2.630321506
16 -0.723056719
17 -4.278394051
18 -1.115327375
19 -1.220204287
20 -2.914846867

Total number of rows: 72

Table truncated, full table size <1 Kbytes.




Supplementary file Size Download File type/resource
GSM1934699_20111102_20111102-9741-1_LGWU102569-1036382WU_06.RCC.gz 1.3 Kb (ftp)(http) RCC
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap