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Sample GSM1934784 Query DataSets for GSM1934784
Status Public on Nov 10, 2015
Title LGWU702526-1036477WU
Sample type RNA
 
Source name Breast Tumor CALGB 702526
Organism Homo sapiens
Characteristics gender: female
tissue type: Breast Tumor
fixative: Formalin-Fixed Paraffin Embedded Tissue
Biomaterial provider CALGB
Treatment protocol The CALGB (Alliance) 9741 adjuvant node-positive breast cancer trial randomized treatment with doxorubicin (A), cyclophosphamide (C), and paclitaxel (T) using a 2x2 factorial design. The two factors were (i) 2-weekly (dose dense; DD) versus 3-weekly administration and (ii) sequential (A→T→C) versus concurrent (AC→T) chemotherapy.
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol http://www.nanostring.com/media/pdf/TN_Using_nCounter_with_FFPE_Samples.pdf
Label NA
Label protocol See manufacturer's website http://www.nanostring.com for procedures
 
Hybridization protocol See manufacturer's website http://www.nanostring.com for procedures.
Scan protocol See manufacturer's website http://www.nanostring.com for procedures. Digital Analyzer was set to scan at 1155 FOV (fields of view)
Data processing See manufacturer's website http://www.nanostring.com. Raw data was background subtracted and normalized to the geometric mean of the housekeepers.
 
Submission date Nov 09, 2015
Last update date Nov 10, 2015
Contact name Sherri R Davies
E-mail(s) [email protected]
Phone 3147473073
Organization name Washington University
Street address 4950 Parkview Place
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL21114
Series (1)
GSE74821 Gene expression analysis of CALGB 9741 patient tumor samples using the nCounter RUO-PAM50 signature

Data table header descriptions
ID_REF
VALUE nCounter signal intensity (log2 transformed)

Data table
ID_REF VALUE
1 5.673356662
2 -2.596751918
3 -4.913326779
4 0.163092963
5 -1.406119436
6 -4.310662276
7 -0.883579435
8 -2.988734181
9 -5.176361185
10 -5.498289279
11 -6.208782662
12 -5.913326779
13 -3.761323685
14 -4.053504437
15 -4.538931264
16 -0.408471017
17 -3.995788939
18 0.275765633
19 1.256227111
20 -5.538931264

Total number of rows: 72

Table truncated, full table size <1 Kbytes.




Supplementary file Size Download File type/resource
GSM1934784_20111104_20111104-9741-4_LGWU702526-1036477WU_03.RCC.gz 1.2 Kb (ftp)(http) RCC
Processed data included within Sample table

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