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GEO accession:
Sample GSM206578
Query DataSets for GSM206578
Status
Public on Jun 30, 2007
Title
NB_tum_1204
Sample type
genomic
Source name
neuroblastoma tumor
Organism
Homo sapiens
Characteristics
Stage 4, MYCN nonamplified, UH, Hyperdiploid
Extracted molecule
genomic DNA
Extraction protocol
Quiagen DNA extraction protocol
Label
biotin
Label protocol
Affymetrix SNP array protocol
Hybridization protocol
Affymetrix SNP array protocol
Scan protocol
Hewlett-Packard scanner
Description
1204T
Data processing
Affymetrix Gene chip 5.0 and www.dchipSNP.org (Cheng Li)
Submission date
Jun 29, 2007
Last update date
Aug 14, 2011
Contact name
Rani E. George
E-mail(s)
[email protected]
Phone
6176325281
Organization name
Dana-Farber Cancer Institute
Department
Pediatric Oncology
Lab
A. Thomas Look
Street address
Dana 322, 44 Binney St
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platform ID
GPL2641
Series (1)
GSE8333
SNP array analysis of neuroblastoma tumors
Data table header descriptions
ID_REF
Signal
VALUE
LOH calls
Data table
ID_REF
Signal
VALUE
AFFX-5Q-123
13043.8
NoCall
AFFX-5Q-456
4731.1
NoCall
AFFX-5Q-789
12449
NoCall
AFFX-5Q-ABC
11426.6
NoCall
SNP_A-1513509
2769.33
AB
SNP_A-1518411
9578.05
A
SNP_A-1511066
4372.89
A
SNP_A-1517367
2508.72
A
SNP_A-1512567
6913.37
AB
SNP_A-1519604
3103.16
A
SNP_A-1507932
1390.74
B
SNP_A-1519685
3860.45
B
SNP_A-1516165
4170.2
B
SNP_A-1514890
1748.31
NoCall
SNP_A-1507580
2225.52
B
SNP_A-1510991
3022.57
A
SNP_A-1516205
2897.03
AB
SNP_A-1512666
3086.76
B
SNP_A-1512740
7299.54
B
SNP_A-1512132
2689.09
A
Total number of rows:
10208
Table truncated, full table size
243 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM206578.CEL.gz
3.1 Mb
(ftp)
(http)
CEL
GSM206578.TXT.gz
317.7 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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