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GEO accession:
Sample GSM206601
Query DataSets for GSM206601
Status
Public on Jun 30, 2007
Title
NB_tum_1092
Sample type
genomic
Source name
neuroblastoma tumor
Organism
Homo sapiens
Characteristics
Stage 4, MYCN nonamplified, UH, hyperdiploid
Extracted molecule
genomic DNA
Extraction protocol
Quiagen DNA extraction protocol
Label
biotin
Label protocol
Affymetrix SNP array protocol
Hybridization protocol
Affymetrix SNP array protocol
Scan protocol
Hewlett-Packard scanner
Description
CHOP 1092T
Data processing
Affymetrix Gene chip 5.0 and www.dchipSNP.org (Cheng Li)
Submission date
Jun 29, 2007
Last update date
Aug 14, 2011
Contact name
Rani E. George
E-mail(s)
[email protected]
Phone
6176325281
Organization name
Dana-Farber Cancer Institute
Department
Pediatric Oncology
Lab
A. Thomas Look
Street address
Dana 322, 44 Binney St
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platform ID
GPL1266
Series (1)
GSE8333
SNP array analysis of neuroblastoma tumors
Data table header descriptions
ID_REF
Signal
VALUE
LOH calls
Data table
ID_REF
Signal
VALUE
AFFX-5Q-123
4435.37
NoCall
AFFX-5Q-456
2650.69
NoCall
AFFX-5Q-789
5215.62
NoCall
AFFX-5Q-ABC
4619.71
NoCall
SNP_A-1513509
244.716
B
SNP_A-1513556
247.183
AB
SNP_A-1518411
545.146
A
SNP_A-1511066
1196.13
A
SNP_A-1517367
94.4674
NoCall
SNP_A-1512567
1027.22
AB
SNP_A-1519604
565.964
A
SNP_A-1507932
427.087
B
SNP_A-1517835
201.553
B
SNP_A-1519685
406.421
AB
SNP_A-1516165
264.408
B
SNP_A-1514890
742.521
B
SNP_A-1507580
1191.42
B
SNP_A-1510991
395.375
AB
SNP_A-1516205
813.132
A
SNP_A-1512666
549.162
NoCall
Total number of rows:
11564
Table truncated, full table size
282 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM206601.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
GSM206601.txt.gz
312.3 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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