NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2070629 Query DataSets for GSM2070629
Status Public on Apr 01, 2016
Title glu-9h-2
Sample type RNA
 
Source name glu 9h
Organism Oryza sativa
Characteristics cultivar: Nipponbare
tissue: 4th leaves at 4-leaf stage
Treatment protocol 10 mM glutamate from roots
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol and cleaned up with an RNeasy plant mini kit (Qiagen).
Label Cy3
Label protocol The RNAs (400-ng aliquots) were labeled with a Low RNA Input Linear Amplification/Labeling Kit (Agilent Technologies)
 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Slides were scanned immediately after washing on Agilent Scanner model G2505B and software G2565BA using default parameters
Description SAMPLE 4
Data processing The scanned images were analyzed with Feature Extraction software (version 9.1; Agilent Technologies) using default parameters.
 
Submission date Feb 24, 2016
Last update date Apr 02, 2016
Contact name Hiroshi Takatsuji
E-mail(s) [email protected]
Organization name National Institute of Agrobiological Sciences
Department Division of Plant Sciences
Lab Plant Disease Resistance Research Unit
Street address 2-1-2 Kannondai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8602
Country Japan
 
Platform ID GPL8852
Series (1)
GSE78266 Rice genes responsive to Glu

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
Os03g0146300|mRNA|AK121395|CDS+3'UTR 1.8407131
Os03g0100100|COMBINER|CI224620|6 -0.3312894
Os06g0591200|mRNA|AK062563|CDS+3'UTR 0.9175035
Os01g0658400|mRNA|AK099284|CDS+3'UTR -0.92373896
Os01g0388500|COMBINER_EST|Os01g0388500|8 9.04E-04
Os12g0403800|mRNA|AK059940|CDS+3'UTR 0.37905926
Os07g0572000|mRNA|AK111653|CDS+3'UTR 0.25025976
Os06g0530200|mRNA|AK073116|CDS+3'UTR -0.18671107
Os02g0149500|mRNA|AK109901|CDS+3'UTR 0.31182146
Os02g0187300|mRNA|AK062633|UTR -0.18649352
Os09g0546900|mRNA|AK062365|CDS+3'UTR -4.7638316
Os04g0308100|mRNA|AK108495|CDS+3'UTR 0.069565594
Os03g0194500|COMBINER_EST|CI391251|0 -0.015998006
Os08g0555800|COMBINER_EST|Os08g0555800|8 -0.16089296
Os10g0522900|mRNA|AK068314|CDS+3'UTR -0.04164338
Os01g0871100|mRNA|AK064743|CDS+3'UTR -0.48111802
Os06g0561800|COMBINER_EST|Os06g0561800|8 -0.17988646
Os03g0684000|mRNA|AK105025|CDS+3'UTR -0.0849787
Os07g0664600|mRNA|AK105211|CDS+3'UTR -0.18426085
Os04g0484300|COMBINER|CI434770|6 -0.60210204

Total number of rows: 42537

Table truncated, full table size 1987 Kbytes.




Supplementary file Size Download File type/resource
GSM2070629_Glu-9h-2.txt.gz 7.6 Mb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap