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Platform GPL8852 Query DataSets for GPL8852
Status Public on Jul 16, 2009
Title Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Oryza sativa
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number 015241
 
Description *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL6864.
 
Web link http://www.agilent.com/
Submission date Jul 14, 2009
Last update date Jan 09, 2014
Organization Agilent Technologies
E-mail(s) [email protected]
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (575) GSM357690, GSM357691, GSM357692, GSM357693, GSM357694, GSM357695 
Series (45)
GSE14301 Rice expression atlas (5): Anther development (Agilent data)
GSE14304 Rice expression atlas: Plant reproductive process
GSE15755 Microarray analysis of a hybrid weakness in the cross between rice cultivars
Relations
Alternative to GPL6864

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
Os01g0100100|COMBINER_EST|CI448596|0 Os01g0100100|COMBINER_EST|CI448596|0 FALSE Os.24643 rapdb|Os01t0100100-01|ta|TA52462_4530|ta|CB671732|tc|TC425842 chr1:9719-9778 RabGAP/TBC domain containing protein. [Os01t0100100-01] TGGAGAGAGAAGGAATGAATGAGGAATGTGTATAAAGCACTAGTGGTAATCACGCAGTCG
Os01g0100200|mRNA|AK059894|CDS+3'UTR Os01g0100200|mRNA|AK059894|CDS+3'UTR FALSE AK059894 Os.37240 rapdb|Os01t0100200-01|gb|AK059894|ta|CI427584|tc|TC435494 chr1:11364-11423 Conserved hypothetical protein. [Os01t0100200-01] TGTCTGGTGTCCGAAGAAGAATATATGTAAATGACATTACCATAATAAATGTTGAATGCT
Os01g0100400|mRNA|AK101455|CDS+3'UTR Os01g0100400|mRNA|AK101455|CDS+3'UTR FALSE AK101455 Os.33183 rapdb|Os01t0100400-01|gb|AK101455|ta|TA58334_4530|tc|TC406985 chr1:14608-14667 Similar to Pectinesterase-like protein. [Os01t0100400-01] TGTGTGATATCTGAAGATCAACTTACTACCCAAACCTAGACTCACAGAAACCAATTGATT
Os01g0100500|mRNA|AK067316|CDS+3'UTR Os01g0100500|mRNA|AK067316|CDS+3'UTR FALSE AK067316 Os.27571 rapdb|Os01t0100500-01|gb|AK067316|ta|TA49723_4530|ta|TA49722_4530 chr1:19068-19127 Immunoglobulin-like domain containing protein. [Os01t0100500-01] ATCGTGTAAATCTTCGTGTTGGTGTGATTCGCCGACCGTTTTCTAGCCGGCTGATTATAT
Os01g0100600|mRNA|AK121362|CDS+3'UTR Os01g0100600|mRNA|AK121362|CDS+3'UTR FALSE AK121362 Os.59545 rapdb|Os01t0100600-01|gb|AK121362|ta|TA59622_4530|ta|CI028440 chr1:25797-25856 Single-stranded nucleic acid binding R3H domain containing protein. [Os01t0100600-01] AGTTGTAGAGGAATATGCTGATCCTTAGAAAGAACTTTGTGTAGCCTATTTGGATGGTTT
Os01g0100700|mRNA|AK059844|CDS+3'UTR Os01g0100700|mRNA|AK059844|CDS+3'UTR FALSE AK288178 Os.95829 rapdb|Os01t0100700-01|gb|AK288178|gb|CT833926|ta|TA36460_4530 chr1:27540-27599 Similar to 40S ribosomal protein S5-1. [Os01t0100700-01] GAAAATGTAGTAGTCTGTTCGCTATCGACATTGTTTTATTACACCCCCAATCCTTGTTCC
Os01g0100700|mRNA|AK121523|CDS+3'UTR Os01g0100700|mRNA|AK121523|CDS+3'UTR FALSE Os.4725 rapdb|Os01t0100700-01|ta|CI052473|tc|TC445091 chr1:27585-27644 Similar to 40S ribosomal protein S5-1. [Os01t0100700-01] CCCAATCCTTGTTCCTGCATGATCTGAGTTCTTTATGTGTGATTGACTGATGATTGGTTC
Os01g0100800|mRNA|AK122012|CDS+3'UTR Os01g0100800|mRNA|AK122012|CDS+3'UTR FALSE AK122012 Os.26562 rapdb|Os01t0100800-01|gb|AK122012|ta|TA58398_4530|tc|TC415385 chr1:33362-33421 Protein of unknown function DUF1664 family protein. [Os01t0100800-01] AAAGAGACACCTGATTGCGTCTTGTTGCAGCAAGTTTGTTTGGGGAGGATGTACTGGAAT
Os01g0100900|COMBINER_EST|CI015509|0 Os01g0100900|COMBINER_EST|CI015509|0 FALSE EU152208 Os.21356 rapdb|Os01t0100900-01|gb|EU152208|ta|TA39541_4530|ta|TA39542_4530 chr1:40036-40095 Pyridoxal phosphate-dependent decarboxylase domain containing protein. [Os01t0100900-01] TTGTGGCATTGCTGATTACTGTTGTACTAGTATTATCATCATGTTCATGTACTCACCATA
Os01g0101200|mRNA|AK067866|CDS+3'UTR Os01g0101200|mRNA|AK067866|CDS+3'UTR FALSE NM_001048276 Os.19507 rapdb|Os01t0101200-01 chr1:62512-62571 2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-01] CCATCCAAACCTGGAACAACAATTTCAGATGCATATACTACTACTTTACATTTGTTCCTT
Os01g0101200|mRNA|AK104517|CDS+3'UTR Os01g0101200|mRNA|AK104517|CDS+3'UTR FALSE NM_001048276 Os.19507 rapdb|Os01t0101200-01|ta|BM421556|ta|BM038512|ta|CI423020 chr1:62456-62515 2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-01] GGGTGTAAATAAATGTGTAATAGTCCCAATCAAGCTAATACTATCATGCTCCCATTCCAT
Os01g0101200|mRNA|AK104625|CDS+3'UTR Os01g0101200|mRNA|AK104625|CDS+3'UTR FALSE NM_001048276 Os.19507 rapdb|Os01t0101200-01|ta|BM421556|ta|BM038512|ta|CI423020 chr1:62453-62512 2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-01] CTGGGGTGTAAATAAATGTGTAATAGTCCCAATCAAGCTAATACTATCATGCTCCCATTC
Os01g0101200|mRNA|AK104752|CDS+3'UTR Os01g0101200|mRNA|AK104752|CDS+3'UTR FALSE NM_001048276 Os.19507 rapdb|Os01t0101200-01|ta|BM421556|ta|BM038512|ta|CI423020 chr1:62453-62512 2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-01] CTGGGGTGTAAATAAATGTGTAATAGTCCCAATCAAGCTAATACTATCATGCTCCCATTC
Os01g0101200|mRNA|AK119457|CDS+3'UTR Os01g0101200|mRNA|AK119457|CDS+3'UTR FALSE NM_001048276 Os.19507 rapdb|Os01t0101200-02|gb|NM_001048276 chr1:64451-64510 2,3-diketo-5-methylthio-1-phosphopentane phosphatase domain containing protein. [Os01t0101200-02] GTTGAGGCCGATCCTTTGTTGAAACTTGTAGTAGTAGTAGTATACTACATACAGTTTAAT
Os01g0101300|COMBINER_EST|CI016681|6 Os01g0101300|COMBINER_EST|CI016681|6 FALSE AK287446 Os.45872 rapdb|Os01t0101300-01|gb|AK287446|ta|TA47708_4530|ta|TA47709_4530 chr1:62540-62481 Conserved hypothetical protein. [Os01t0101300-01] TCTGAAATTGTTGTTCCAGGTTTGGATGGAATGGGAGCATGATAGTATTAGCTTGATTGG
Os01g0101600|mRNA|AK099952|CDS+3'UTR Os01g0101600|mRNA|AK099952|CDS+3'UTR FALSE AK099952 Os.15960 rapdb|Os01t0101600-01|gb|AK099952|ta|TA49501_4530|ta|CI424780 chr1:77269-77328 Immunoglobulin-like fold domain containing protein. [Os01t0101600-01] TGGGGTTGTGCTTCTGTGGATGTAATACACTCGTCCACTGTATTGGGTTATTGTTAGAAT
Os01g0101600|mRNA|AK103820|CDS+3'UTR Os01g0101600|mRNA|AK103820|CDS+3'UTR FALSE CI338411 Os.96988 rapdb|Os01t0101600-02|rapdb|Os01t0101600-03|gb|CI338411|ta|TA49500_4530 chr1:76283-76342 Immunoglobulin-like fold domain containing protein. [Os01t0101600-02] TAGTACTGTGAGGTCAAACCAACCATATATTTGTCGTTGCAGGCTTGTGGTTCCATGAAG
Os01g0101600|mRNA|AK122118|CDS+3'UTR Os01g0101600|mRNA|AK122118|CDS+3'UTR FALSE CI338411 Os.96988 rapdb|Os01t0101600-02|rapdb|Os01t0101600-03|gb|CI338411|ta|TA49500_4530 chr1:76283-76342 Immunoglobulin-like fold domain containing protein. [Os01t0101600-02] TAGTACTGTGAGGTCAAACCAACCATATATTTGTCGTTGCAGGCTTGTGGTTCCATGAAG
Os01g0101700|COMBINER_EST|CI525185|3 Os01g0101700|COMBINER_EST|CI525185|3 FALSE NM_001048279 Os.5648 gb|NM_001048279|ta|TA64444_4530|ta|CI016518|tc|TC432183 chr1:83104-83163 Oryza sativa Japonica Group Os01g0101700 (Os01g0101700) mRNA, complete cds [NM_001048279] ATGGGGGTATTTGTGTCAGTATACTGTATACCCAACCCAAGCTATGAATGAACGATGAAG
Os01g0101800|mRNA|AK103498|CDS+3'UTR Os01g0101800|mRNA|AK103498|CDS+3'UTR FALSE AK103498 Os.32622 rapdb|Os01t0101800-01|gb|AK103498|ta|TA65231_4530|ta|CR287701 chr1:87701-87760 Conserved hypothetical protein. [Os01t0101800-01] AGGAACAGCATGTCATGTGCATCCTTTGTTTGACAGAAAATGGAAGGACCATGTGCGTGG

Total number of rows: 42538

Table truncated, full table size 12771 Kbytes.






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