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Sample GSM2171 Query DataSets for GSM2171
Status Public on Jun 27, 2002
Title PC-3 (CL11001) PROSTATE
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name PC-3 (CL11001) PROSTATE
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp1214
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1936 255 1013 237 776 1212 370 1582 .64 0 .537 7 26 1.076 .689 .929 1.451 .393 8 16 93 101 .537
2 1944 816 1654 870 784 1225 1359 2584 .783 0 .736 32 46 .938 .6 1.066 1.665 .602 8 16 101 109 .736
3 1952 56 845 45 800 1250 70 1320 .63 0 .322 0 5 1.244 .8 .804 1.25 .38 8 16 110 118 .322
4 1968 18 1120 320 800 1250 500 1750 .596 0 4.796 0 36 .056 .036 17.778 27.778 .385 8 16 119 127 4.796
5 1968 931 2804 1996 808 1262 3119 4381 .936 0 1.744 38 57 .466 .298 2.144 3.35 1.809 8 16 128 136 1.744
6 1968 146 848 40 808 1262 63 1325 .291 0 -1.213 0 1 3.65 2.317 .274 .432 .218 8 16 136 144 -1.213
7 1968 2153 2026 1218 808 1262 1903 3165 .95 0 -.178 48 51 1.768 1.131 .566 .884 .521 8 16 145 153 -.178
8 1968 1178 7392 6584 808 1262 10288 11550 .956 0 3.127 44 63 .179 .115 5.589 8.733 5.002 8 16 154 162 3.127
9 1976 -11 794 -6 800 1250 -10 1240 .089 0 0 0 0 .095 8 16 163 171
10 1960 637 1384 584 800 1250 912 2162 .847 0 .518 38 48 1.091 .698 .917 1.432 .706 8 16 171 179 .518
11 1960 178 905 105 800 1250 164 1414 .401 0 -.118 0 3 1.695 1.085 .59 .921 .259 9 17 180 188 -.118
12 1968 166 864 56 808 1262 88 1350 .425 0 -.916 0 3 2.964 1.886 .337 .53 .312 9 17 189 197 -.916
13 1960 -12 839 31 808 1262 48 1310 -.037 0 0 0 0 -.037 9 17 198 206
14 1976 2352 2166 1358 808 1262 2122 3384 .948 0 -.148 55 59 1.732 1.108 .577 .902 .528 9 17 207 215 -.148
15 2000 115 927 119 808 1262 186 1448 .575 0 .694 0 13 .966 .618 1.035 1.617 .423 9 17 215 223 .694
16 2008 86 823 23 800 1250 35 1285 .455 0 -1.297 0 0 3.739 2.457 .267 .407 .311 9 17 224 232 -1.297
17 2016 -51 812 20 792 1237 31 1268 .72 0 0 1 0 .416 9 17 233 241
18 2024 -78 772 -20 792 1237 -31 1206 .766 0 0 0 0 .44 9 17 242 250
19 2016 285 961 177 784 1225 276 1501 .715 0 -.046 1 23 1.61 1.033 .621 .968 .453 9 17 250 258 -.046
20 2024 378 1020 228 792 1237 356 1593 .677 0 -.087 7 25 1.658 1.062 .603 .942 .373 9 17 259 267 -.087

Total number of rows: 9984

Table truncated, full table size 1053 Kbytes.




Supplementary data files not provided
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