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GEO accession:
Sample GSM225534
Query DataSets for GSM225534
Status
Public on Aug 22, 2008
Title
Smad5MOC
Sample type
RNA
Channel 1
Source name
Smad5 morphant
Organism
Danio rerio
Characteristics
Smad5 morphant, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy5
Label protocol
Nimblegen
Channel 2
Source name
Wildtype
Organism
Danio rerio
Characteristics
Wildtype, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy3
Label protocol
Nimblegen
Hybridization protocol
Nimblegen
Scan protocol
Nimblegen
Description
set C
Data processing
Data normalized using NimbleScan. Log2 ratios (experimental/wildtype) determined using R analysis software.
Submission date
Aug 29, 2007
Last update date
Aug 22, 2008
Contact name
Lisa J. McReynolds
E-mail(s)
[email protected]
Organization name
Albert Einstein College of Medicine
Department
Developmental and Molecular Biology
Lab
Todd Evans
Street address
1300 Morris Park Ave. Chanin 501
City
Bronx
State/province
NY
ZIP/Postal code
10461
Country
USA
Platform ID
GPL5783
Series (1)
GSE8903
Comparsion of Smad1 and Smad5 Dependent Transcript Profiles in Zebrafish
Data table header descriptions
ID_REF
VALUE
log2 ratio
CH1_SIGNAL
experimental sample raw data
CH2_SIGNAL
wildtype sample raw data
Data table
ID_REF
VALUE
CH1_SIGNAL
CH2_SIGNAL
3626_0331_0947
-0.457774551365011
14021.33
22161.45
3626_0419_0911
-0.358708638757336
15418.78
22071.67
3626_0354_0810
-0.388731562497864
9603.89
14166.78
3626_0264_0944
-0.570343426001628
6480.33
11462.89
3626_0245_0607
-0.548714150539248
4279.22
7407.44
3626_0479_0167
-0.304256502494221
8794.44
11921.89
3626_0172_0532
-0.596455796835714
12389.78
22495.78
3626_0728_0748
-0.476578126778682
7787.11
12541.56
3626_0584_0410
-0.551801504990095
5990.44
10401.67
3626_0485_0839
0.0392658682850446
29525.55
28388.67
3626_0184_0102
0.163282408691189
55067.78
46771.89
3626_0619_0357
-0.0280050318880891
35581.67
36592.22
3626_0067_0667
0.0983843290249324
38327
34735.78
3626_0313_0945
0.0938130355376739
36801.22
33505.78
3626_0764_0214
0.0293299699400129
47875
46491.22
3626_0488_0840
0.005569871303741
25606.78
25464.55
3626_0366_0604
0.095821095066987
15938.22
14481.89
3626_0101_0335
0.223484793409988
11306.22
9041.89
3626_0103_0121
-0.421832719580036
31135.67
47474.22
3626_0254_0524
-0.485959430481202
14536
23631.67
Total number of rows:
389359
Table truncated, full table size
18153 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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