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GEO accession:
Sample GSM225549
Query DataSets for GSM225549
Status
Public on Aug 22, 2008
Title
Smad1MOE
Sample type
RNA
Channel 1
Source name
Smad1 morphant
Organism
Danio rerio
Characteristics
Smad1 morphant, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy3
Label protocol
Nimblegen
Channel 2
Source name
Wildtype
Organism
Danio rerio
Characteristics
Wildtype, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy5
Label protocol
Nimblegen
Hybridization protocol
Nimblegen
Scan protocol
Nimblegen
Description
set E
Data processing
Data normalized using NimbleScan. Log2 ratios (experimental/wildtype) determined using R analysis software.
Submission date
Aug 29, 2007
Last update date
Aug 22, 2008
Contact name
Lisa J. McReynolds
E-mail(s)
[email protected]
Organization name
Albert Einstein College of Medicine
Department
Developmental and Molecular Biology
Lab
Todd Evans
Street address
1300 Morris Park Ave. Chanin 501
City
Bronx
State/province
NY
ZIP/Postal code
10461
Country
USA
Platform ID
GPL5783
Series (1)
GSE8903
Comparsion of Smad1 and Smad5 Dependent Transcript Profiles in Zebrafish
Data table header descriptions
ID_REF
VALUE
log2 ratio
CH1_SIGNAL
experimental sample raw data
CH2_SIGNAL
wildtype sample raw data
Data table
ID_REF
VALUE
CH1_SIGNAL
CH2_SIGNAL
3626_0331_0947
0.483383008514573
16962.33
10460.56
3626_0419_0911
0.220211734630830
20504.11
16451.45
3626_0354_0810
0.154835212600796
9652.22
8267.67
3626_0264_0944
0.311904260543411
6857.44
5020
3626_0245_0607
0.377514169844935
6949.67
4764.44
3626_0479_0167
0.55171846891031
7157.33
4122.33
3626_0172_0532
0.225198806421396
15574.89
12434.33
3626_0728_0748
-0.00776155966202482
13590
13695.89
3626_0584_0410
-0.133945595175489
6462.89
7389.22
3626_0485_0839
0.338369226728809
51355.22
36612.78
3626_0184_0102
0.288814340872618
31453.22
23563.22
3626_0619_0357
0.426711951074222
45543.11
29723.78
3626_0067_0667
0.314690382365420
42442.67
30983.78
3626_0313_0945
0.378621869970241
41457.89
28390.55
3626_0764_0214
-0.0363514318668322
49279.55
51103.89
3626_0488_0840
0.211506164194625
37807.45
30600
3626_0366_0604
-0.0222554061357226
15310.44
15655
3626_0101_0335
-0.185665453618651
9030.22
10872.56
3626_0103_0121
-0.265082408610729
24903.67
32462.89
3626_0254_0524
-0.113084600671434
24681.22
27636.22
Total number of rows:
389359
Table truncated, full table size
18343 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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