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Sample GSM252726 Query DataSets for GSM252726
Status Public on Dec 04, 2008
Title Control hypothyroid CH_18
Sample type RNA
 
Source name control hypothyroid
Organism Mus musculus
Characteristics Mouse liver total RNA; mixed strain background (B6;129S); NCoRloxP/loxP ; mice were put on a low iodine diet supplemented with 0.15% PTU (LoI/PTU-Harlan Teklad TD.95125) for 3 weeks.
Extracted molecule total RNA
Extraction protocol Total RNA from was isolated using Trizol as described above and further purified with RNeasy Mini kit per manufacturer’s instructions (Qiagen, Valencia, CA). 200 ng total RNA was then used for GeneChip analysis. Preparation of terminal-labeled cDNA, hybridization to genome-wide murine Gene Level 1.0 ST GeneChips (Affymetrix, Santa Clara, CA, USA) and scanning of the arrays were carried out according to manufacturer’s protocols (https://www.affymetrix.com).
Label Biotin
Label protocol WT labeling kit (www.affymetrix.com)
 
Hybridization protocol affymetrix
Scan protocol affymetrix
Description affymetrix
Data processing RMA signal intensity calculation
 
Submission date Dec 21, 2007
Last update date Dec 03, 2008
Contact name Martin Bilban
E-mail(s) [email protected]
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL6246
Series (1)
GSE10001 Gene expression profiling in NCoR deficient mouse livers

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2)

Data table
ID_REF VALUE
10338001 11.63103
10338002 6.703605
10338003 10.29694
10338004 9.055856
10338005 1.535413
10338006 1.761552
10338007 2.178956
10338008 3.22157
10338009 9.208696
10338010 1.603739
10338011 5.801945
10338012 1.658963
10338013 1.479981
10338014 1.507427
10338015 1.502113
10338016 8.205614
10338017 12.63071
10338018 7.17446
10338019 5.10328
10338020 9.18213

Total number of rows: 35557

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM252726.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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