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Platform GPL6246 Query DataSets for GPL6246
Status Public on Dec 05, 2007
Title [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 07, 2012: annotation table updated with netaffx build 32
July 01, 2016: annotation table updated with netaffx build 35
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=mogene-1_0-st-v1
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
Submission date Dec 05, 2007
Last update date Mar 04, 2019
Organization Affymetrix, Inc.
E-mail(s) [email protected], [email protected]
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (30419) GSM252722, GSM252723, GSM252724, GSM252725, GSM252726, GSM252727 
Series (2504)
GSE10001 Gene expression profiling in NCoR deficient mouse livers
GSE10530 Card9 dependent activation of macrophages by TDB
GSE11105 Expression data from tibialis anterior muscle
Relations
Alternative to GPL9525 (Alternative CDF [affy9939alt])
Alternative to GPL10528 (Alternative CDF [MoGene10stv1_Mm_ENSG])
Alternative to GPL10655 ( v1.na30.1.mm9.probeset)
Alternative to GPL10740 (probe set (exon) version)
Alternative to GPL10742 (Alternative CDF [ MoGene10stv1_Mm_ENST])
Alternative to GPL11078 (Alternative CDF [MoGene10stv1_Mm_ENTREZG_13])
Alternative to GPL11204 (Alternative CDF [ MoGene10stv1_Mm_ENST])
Alternative to GPL13455 (Alternative CDF [Brainarray MoGene10stv1_Mm_REFSEQ version 14])
Alternative to GPL13730 (Alternative CDF [ MoGene10stv1_Mm_ENTREZG_14.1.0])
Alternative to GPL14866 (Alternative CDF [MoGene10stv1_Mm_ENSG version 14])
Alternative to GPL15733 (Alternative CDF [ MoGene10stv1_Mm_ENTREZG_12.1.0])
Alternative to GPL15912 (Alternative CDF [ MoGene10stv1_Mm_REFSEQ_13.0.0])
Alternative to GPL17103 (Alternative CDF [MoGene10stv1_Mm_ENSG version 15])
Alternative to GPL17777 (Alternative CDF [mogene10st_Mm_ENTREZG_17.1.0])
Alternative to GPL17940 (mogene10st_annotation.csv)
Alternative to GPL17984 (transcript (gene) version, ENSG 60)
Alternative to GPL18535 (Alternative CDF [MoGene10stv1_Mm_ENTREZG_15.1.0])
Alternative to GPL19103 (Alternative CDF [mogene10st_Mm_ENTREZG_18.0.0])
Alternative to GPL19192 (Alternative CDF [GATExplorer_Ensembl v57])
Alternative to GPL19317 (Alternative CDF [ MoGene10stv1_Mm_ENSG v.18.0.0])
Alternative to GPL19485 (Alternative CDF [MoGene10stv1_Mm_ENTREZG_16.0.0])
Alternative to GPL19972 (Alternative CDF [MoGene10stv1_Mm_REFSEQ version 18])
Alternative to GPL20023 (Alternative CDF [mogene10stv1_75_030genes])
Alternative to GPL20205 ([MoGene10stv1_Mm_REFSEQ_14.1.0])
Alternative to GPL20894 (Alternative CDF [MoGene10stv1_Mm_ENSG v.19.0.0])
Alternative to GPL21783 (Alternative CDF[MoGene10st_Mm_ENTREZG_17.0.0])
Alternative to GPL26217 (Alternative CDF [mogene10st_Mm_ENTREZG_22.0.0])
Alternative to GPL26250 (alternative)

Data table header descriptions
ID transcript_cluster_id
GB_LIST
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname chromosome number
RANGE_GB NCBI RefSeq for chromosome of current build
RANGE_STRAND strand (+|-)
RANGE_START start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_STOP stop (integer). Coordinates are standard 1-based (length=stop-start+1).
total_probes Total number of probes contained by this transcript cluster.
gene_assignment Gene information for each assigned mRNA for mRNAs that corresponds to known genes (multipart).
mrna_assignment Description of the public mRNAs that should be detected by the sets within this transcript cluster based on sequence alignment (multipart).
category Array design category of the transcript cluster

Data table
ID GB_LIST SPOT_ID seqname RANGE_GB RANGE_STRAND RANGE_START RANGE_STOP total_probes gene_assignment mrna_assignment category
10344614 AK145513,AK145782 chr1:3054233-3054733 chr1 NC_000067.6 + 3054233 3054733 33 ENSMUST00000160944 // Gm16088 // predicted gene 16088 // --- // --- /// ENSMUST00000120800 // Gm14300 // predicted gene 14300 // --- // --- /// ENSMUST00000179907 // G430049J08Rik // RIKEN cDNA G430049J08 gene // --- // --- /// AK145513 // Gm2889 // predicted gene 2889 // 18 A1|18 // 100040658 ENSMUST00000160944 // ENSEMBL // havana:known chromosome:GRCm38:1:3054233:3054733:1 gene:ENSMUSG00000090025 gene_biotype:pseudogene transcript_biotype:unprocessed_pseudogene // chr1 // 100 // 100 // 33 // 33 // 0 /// ENSMUST00000120800 // ENSEMBL // havana:known chromosome:GRCm38:2:179612622:179613567:-1 gene:ENSMUSG00000083410 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // chr1 // 30 // 100 // 10 // 33 // 0 /// ENSMUST00000179907 // ENSEMBL // ensembl:known chromosome:GRCm38:18:3471630:3474315:1 gene:ENSMUSG00000096528 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 42 // 100 // 14 // 33 // 0 /// AK145513 // GenBank HTC // Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0009C06 product:hypothetical DeoxyUTP pyrophosphatase/Aspartyl protease, retroviral-type family profile/Retrovirus capsid, C-terminal/Peptidase aspartic/Peptidase aspartic, active site containing protein, full insert sequence. // chr1 // 24 // 100 // 8 // 33 // 0 /// AK145782 // GenBank HTC // Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0042P10 product:hypothetical protein, full insert sequence. // chr1 // 52 // 100 // 17 // 33 // 0 /// KnowTID_00005135 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 52 // 100 // 17 // 33 // 0 /// NONMMUT044096 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 52 // 100 // 17 // 33 // 0 /// AK139746 // GenBank HTC // Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020014N01 product:hypothetical protein, full insert sequence. // chr1 // 42 // 100 // 14 // 33 // 0 /// AK145590 // GenBank HTC // Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0019N16 product:unclassifiable, full insert sequence. // chr1 // 42 // 100 // 14 // 33 // 0 /// AK145750 // GenBank HTC // Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0037K09 product:unclassifiable, full insert sequence. // chr1 // 36 // 85 // 10 // 28 // 0 /// AK165162 // GenBank HTC // Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched library, clone:E860009L19 product:unclassifiable, full insert sequence. // chr1 // 48 // 100 // 16 // 33 // 0 /// KnowTID_00001379 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 42 // 100 // 14 // 33 // 0 /// KnowTID_00001380 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 42 // 100 // 14 // 33 // 0 /// KnowTID_00002541 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 36 // 85 // 10 // 28 // 0 /// KnowTID_00003768 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 42 // 100 // 14 // 33 // 0 /// KnowTID_00005134 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 45 // 100 // 15 // 33 // 0 /// NONMMUT013638 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 42 // 100 // 14 // 33 // 0 /// NONMMUT013641 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 42 // 100 // 14 // 33 // 0 /// NONMMUT021887 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 36 // 85 // 10 // 28 // 0 /// NONMMUT044095 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 45 // 100 // 15 // 33 // 0 /// NONMMUT046086 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 48 // 100 // 16 // 33 // 0 /// NONMMUT046087 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 48 // 100 // 16 // 33 // 0 /// AK145700 // GenBank HTC // Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0031F10 product:hypothetical protein, full insert sequence. // chr1 // 24 // 100 // 8 // 33 // 0 /// KnowTID_00003789 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 24 // 100 // 8 // 33 // 0 /// NONMMUT031618 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 24 // 100 // 8 // 33 // 0 /// KnowTID_00002704 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 24 // 24 // 8 // 33 // 1 /// NONMMUT023055 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 24 // 24 // 8 // 33 // 1 main
10344616 chr1:3102016-3102125 chr1 NC_000067.6 + 3102016 3102125 25 ENSMUST00000082908 // Gm26206 // predicted gene, 26206 // --- // --- ENSMUST00000082908 // ENSEMBL // ncrna:known chromosome:GRCm38:1:3102016:3102125:1 gene:ENSMUSG00000064842 gene_biotype:snRNA transcript_biotype:snRNA // chr1 // 100 // 100 // 25 // 25 // 0 /// NONMMUT000002 // NONCODE // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 25 // 25 // 0 main
10344618 chr1:3276323-3277348 chr1 NC_000067.6 + 3276323 3277348 25 --- --- main
10344620 AK140060 chr1:3680571-3680912 chr1 NC_000067.6 + 3680571 3680912 25 AK140060 // Gm10568 // predicted gene 10568 // --- // 100038431 AK140060 // GenBank HTC // Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230115G11 product:hypothetical protein, full insert sequence. // chr1 // 100 // 100 // 25 // 25 // 0 /// KnowTID_00000002 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 100 // 100 // 25 // 25 // 0 /// NONMMUT000015 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 25 // 25 // 0 main
10344622 chr1:4771131-4772199 chr1 NC_000067.6 + 4771131 4772199 8 --- GENSCAN00000005057 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:4771131:4772199:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 main
10344624 NM_008866,XM_006495471,AK050549,AK167231,BC013536,BC052848,CT010201,U89352,AK016021,AK034851 chr1:4807862-4846736 chr1 NC_000067.6 + 4807862 4846736 23 NM_008866 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// XM_006495471 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// ENSMUST00000027036 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// ENSMUST00000115529 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// ENSMUST00000131119 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// ENSMUST00000137887 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// ENSMUST00000150971 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// ENSMUST00000155020 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// AK050549 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// AK167231 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// BC013536 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// BC052848 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// CT010201 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// U89352 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// ENSMUST00000134384 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// ENSMUST00000119612 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// ENSMUST00000141278 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// AK016021 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 /// AK034851 // Lypla1 // lysophospholipase 1 // 1 A1|1 // 18777 NM_008866 // RefSeq // Mus musculus lysophospholipase 1 (Lypla1), mRNA. // chr1 // 100 // 100 // 23 // 23 // 0 /// XM_006495471 // RefSeq // PREDICTED: Mus musculus lysophospholipase 1 (Lypla1), transcript variant X1, mRNA. // chr1 // 95 // 87 // 19 // 20 // 0 /// ENSMUST00000027036 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:1:4807823:4846739:1 gene:ENSMUSG00000025903 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 23 // 23 // 0 /// ENSMUST00000115529 // ENSEMBL // havana:novel chromosome:GRCm38:1:4807911:4845352:1 gene:ENSMUSG00000025903 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 94 // 74 // 16 // 17 // 0 /// ENSMUST00000131119 // ENSEMBL // havana:putative chromosome:GRCm38:1:4808237:4841093:1 gene:ENSMUSG00000025903 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 74 // 17 // 17 // 0 /// ENSMUST00000137887 // ENSEMBL // havana:novel chromosome:GRCm38:1:4807898:4840969:1 gene:ENSMUSG00000025903 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 95 // 83 // 18 // 19 // 0 /// ENSMUST00000150971 // ENSEMBL // havana:putative chromosome:GRCm38:1:4807918:4841286:1 gene:ENSMUSG00000025903 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 87 // 20 // 20 // 0 /// ENSMUST00000155020 // ENSEMBL // havana:known chromosome:GRCm38:1:4807892:4886770:1 gene:ENSMUSG00000025903 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // chr1 // 100 // 74 // 17 // 17 // 0 /// AK050549 // GenBank HTC // Mus musculus adult pancreas islet cells cDNA, RIKEN full-length enriched library, clone:C820014D19 product:lysophospholipase 1, full insert sequence. // chr1 // 100 // 87 // 20 // 20 // 0 /// AK167231 // GenBank HTC // Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0043L13 product:lysophospholipase 1, full insert sequence. // chr1 // 91 // 100 // 21 // 23 // 0 /// BC013536 // GenBank // Mus musculus lysophospholipase 1, mRNA (cDNA clone MGC:19218 IMAGE:4240573), complete cds. // chr1 // 100 // 100 // 23 // 23 // 0 /// BC052848 // GenBank // Mus musculus lysophospholipase 1, mRNA (cDNA clone MGC:60679 IMAGE:30055025), complete cds. // chr1 // 96 // 100 // 22 // 23 // 0 /// CT010201 // GenBank // Mus musculus full open reading frame cDNA clone RZPDo836F0950D for gene Lypla1, Lysophospholipase 1; complete cds, incl. stopcodon. // chr1 // 100 // 87 // 20 // 20 // 0 /// U89352 // GenBank // Mus musculus lysophospholipase I mRNA, complete cds. // chr1 // 100 // 87 // 20 // 20 // 0 /// ENSMUST00000134384 // ENSEMBL // havana:known chromosome:GRCm38:1:4807788:4848410:1 gene:ENSMUSG00000025903 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // chr1 // 87 // 87 // 20 // 23 // 1 /// ENSMUST00000119612 // ENSEMBL // havana:putative chromosome:GRCm38:1:4807896:4845174:1 gene:ENSMUSG00000025903 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 52 // 52 // 12 // 23 // 1 /// ENSMUST00000141278 // ENSEMBL // havana:known chromosome:GRCm38:1:4836905:4842827:1 gene:ENSMUSG00000025903 gene_biotype:protein_coding transcript_biotype:retained_intron // chr1 // 35 // 35 // 8 // 23 // 1 /// AK016021 // GenBank HTC // Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930542E11 product:CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 ISOFORM 2 homolog [Oryctolagus cuniculus], full insert sequence. // chr1 // 35 // 35 // 8 // 23 // 1 /// AK034851 // GenBank HTC // Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430047N20 product:lysophospholipase 1, full insert sequence. // chr1 // 35 // 35 // 8 // 23 // 1 /// GENSCAN00000004993 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:4807409:4845016:1 transcript_biotype:protein_coding // chr1 // 48 // 48 // 11 // 23 // 1 /// NONMMUT000037 // NONCODE // Non-coding transcript identified by NONCODE: Exonic // chr1 // 35 // 35 // 8 // 23 // 1 main
10344633 NM_001159750,NM_011541,BC061490,BC083127,M18210,BC006022 chr1:4857814-4897909 chr1 NC_000067.6 + 4857814 4897909 8 NM_001159750 // Tcea1 // transcription elongation factor A (SII) 1 // 1 A1|1 // 21399 /// NM_011541 // Tcea1 // transcription elongation factor A (SII) 1 // 1 A1|1 // 21399 /// ENSMUST00000081551 // Tcea1 // transcription elongation factor A (SII) 1 // 1 A1|1 // 21399 /// BC061490 // Tcea1 // transcription elongation factor A (SII) 1 // 1 A1|1 // 21399 /// BC083127 // Tcea1 // transcription elongation factor A (SII) 1 // 1 A1|1 // 21399 /// M18210 // Tcea1 // transcription elongation factor A (SII) 1 // 1 A1|1 // 21399 /// BC006022 // Tcea1 // transcription elongation factor A (SII) 1 // 1 A1|1 // 21399 NM_001159750 // RefSeq // Mus musculus transcription elongation factor A (SII) 1 (Tcea1), transcript variant 3, mRNA. // chr1 // 100 // 100 // 8 // 8 // 0 /// NM_011541 // RefSeq // Mus musculus transcription elongation factor A (SII) 1 (Tcea1), transcript variant 2, mRNA. // chr1 // 100 // 100 // 8 // 8 // 0 /// ENSMUST00000081551 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:1:4857814:4897905:1 gene:ENSMUSG00000033813 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// BC061490 // GenBank // Mus musculus transcription elongation factor A (SII) 1, mRNA (cDNA clone MGC:70239 IMAGE:2582185), complete cds. // chr1 // 100 // 100 // 8 // 8 // 0 /// BC083127 // GenBank // Mus musculus transcription elongation factor A (SII) 1, mRNA (cDNA clone MGC:103154 IMAGE:6390364), complete cds. // chr1 // 100 // 100 // 8 // 8 // 0 /// M18210 // GenBank // Mouse transcription factor S-II, clone PSII-3. // chr1 // 100 // 63 // 5 // 5 // 0 /// BC006022 // GenBank // Mus musculus transcription elongation factor A (SII) 1, mRNA (cDNA clone MGC:6153 IMAGE:3590733), complete cds. // chr1 // 63 // 100 // 5 // 8 // 0 main
10344637 NM_133826,XM_006495437,XM_006495438,BC009154,AK034165,AK081492 chr1:5083172-5162549 chr1 NC_000067.6 + 5083172 5162549 30 NM_133826 // Atp6v1h // ATPase, H+ transporting, lysosomal V1 subunit H // 1 A1|1 // 108664 /// XM_006495437 // Atp6v1h // ATPase, H+ transporting, lysosomal V1 subunit H // 1 A1|1 // 108664 /// XM_006495438 // Atp6v1h // ATPase, H+ transporting, lysosomal V1 subunit H // 1 A1|1 // 108664 /// ENSMUST00000044369 // Atp6v1h // ATPase, H+ transporting, lysosomal V1 subunit H // 1 A1|1 // 108664 /// BC009154 // Atp6v1h // ATPase, H+ transporting, lysosomal V1 subunit H // 1 A1|1 // 108664 /// AK034165 // Atp6v1h // ATPase, H+ transporting, lysosomal V1 subunit H // 1 A1|1 // 108664 /// AK081492 // Atp6v1h // ATPase, H+ transporting, lysosomal V1 subunit H // 1 A1|1 // 108664 NM_133826 // RefSeq // Mus musculus ATPase, H+ transporting, lysosomal V1 subunit H (Atp6v1h), mRNA. // chr1 // 100 // 100 // 30 // 30 // 0 /// XM_006495437 // RefSeq // PREDICTED: Mus musculus ATPase, H+ transporting, lysosomal V1 subunit H (Atp6v1h), transcript variant X5, mRNA. // chr1 // 100 // 53 // 16 // 16 // 0 /// XM_006495438 // RefSeq // PREDICTED: Mus musculus ATPase, H+ transporting, lysosomal V1 subunit H (Atp6v1h), transcript variant X6, mRNA. // chr1 // 100 // 53 // 16 // 16 // 0 /// ENSMUST00000044369 // ENSEMBL // ensembl:known chromosome:GRCm38:1:5083173:5162549:1 gene:ENSMUSG00000033793 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 30 // 30 // 0 /// BC009154 // GenBank // Mus musculus ATPase, H+ transporting, lysosomal V1 subunit H, mRNA (cDNA clone MGC:11985 IMAGE:3601621), complete cds. // chr1 // 100 // 93 // 28 // 28 // 0 /// AK034165 // GenBank HTC // Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330160M17 product:similar to MSTP042 [Homo sapiens], full insert sequence. // chr1 // 73 // 73 // 22 // 30 // 1 /// AK081492 // GenBank HTC // Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130021C16 product:hypothetical V-ATPase subunit H containing protein, full insert sequence. // chr1 // 40 // 40 // 12 // 30 // 1 /// GENSCAN00000045875 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:5084460:5217241:1 transcript_biotype:protein_coding // chr1 // 80 // 80 // 24 // 30 // 1 main
10344653 NM_001204371,NM_011011,BC116795,BC119026,L11065,AK138198 chr1:5588493-5602866 chr1 NC_000067.6 + 5588493 5602866 25 NM_001204371 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 /// NM_011011 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 /// ENSMUST00000027038 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 /// ENSMUST00000160339 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 /// ENSMUST00000160777 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 /// BC116795 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 /// BC119026 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 /// L11065 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 /// ENSMUST00000159083 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 /// AK138198 // Oprk1 // opioid receptor, kappa 1 // 1 A2-A3|1 1.89 cM // 18387 NM_001204371 // RefSeq // Mus musculus opioid receptor, kappa 1 (Oprk1), transcript variant 1, mRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// NM_011011 // RefSeq // Mus musculus opioid receptor, kappa 1 (Oprk1), transcript variant 2, mRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// ENSMUST00000027038 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:1:5588557:5602866:1 gene:ENSMUSG00000025905 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// ENSMUST00000160339 // ENSEMBL // havana:known chromosome:GRCm38:1:5588941:5604014:1 gene:ENSMUSG00000025905 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 88 // 22 // 22 // 0 /// ENSMUST00000160777 // ENSEMBL // havana:known chromosome:GRCm38:1:5588493:5606131:1 gene:ENSMUSG00000025905 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// BC116795 // GenBank // Mus musculus opioid receptor, kappa 1, mRNA (cDNA clone MGC:151172 IMAGE:40126114), complete cds. // chr1 // 100 // 100 // 25 // 25 // 0 /// BC119026 // GenBank // Mus musculus opioid receptor, kappa 1, mRNA (cDNA clone MGC:155342 IMAGE:8733775), complete cds. // chr1 // 100 // 100 // 25 // 25 // 0 /// L11065 // GenBank // Mouse kappa opioid receptor mRNA, complete cds. // chr1 // 100 // 100 // 25 // 25 // 0 /// ENSMUST00000159083 // ENSEMBL // havana:known chromosome:GRCm38:1:5596518:5603153:1 gene:ENSMUSG00000025905 gene_biotype:protein_coding transcript_biotype:retained_intron // chr1 // 72 // 72 // 18 // 25 // 1 /// AK138198 // GenBank HTC // Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230031G11 product:opioid receptor, kappa 1, full insert sequence. // chr1 // 56 // 56 // 14 // 25 // 1 /// GENSCAN00000045874 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:5578692:5633299:1 transcript_biotype:protein_coding // chr1 // 100 // 96 // 24 // 24 // 0 main
10344658 NM_009826,AB050017,AB070619,BC150774,XM_006495444 chr1:6214662-6275575 chr1 NC_000067.6 + 6214662 6275575 29 NM_009826 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// ENSMUST00000027040 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// ENSMUST00000159530 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// ENSMUST00000159656 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// ENSMUST00000161327 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// ENSMUST00000162257 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// AB050017 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// AB070619 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// BC150774 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// XM_006495444 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 /// ENSMUST00000162795 // Rb1cc1 // RB1-inducible coiled-coil 1 // 1|1 A2 // 12421 NM_009826 // RefSeq // Mus musculus RB1-inducible coiled-coil 1 (Rb1cc1), mRNA. // chr1 // 100 // 100 // 29 // 29 // 0 /// ENSMUST00000027040 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:1:6214645:6276648:1 gene:ENSMUSG00000025907 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 29 // 29 // 0 /// ENSMUST00000159530 // ENSEMBL // havana:putative chromosome:GRCm38:1:6262933:6274489:1 gene:ENSMUSG00000025907 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 31 // 9 // 9 // 0 /// ENSMUST00000159656 // ENSEMBL // havana:known chromosome:GRCm38:1:6270678:6275575:1 gene:ENSMUSG00000025907 gene_biotype:protein_coding transcript_biotype:retained_intron // chr1 // 100 // 28 // 8 // 8 // 0 /// ENSMUST00000161327 // ENSEMBL // havana:novel chromosome:GRCm38:1:6234279:6275577:1 gene:ENSMUSG00000025907 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 86 // 25 // 25 // 0 /// ENSMUST00000162257 // ENSEMBL // havana:known chromosome:GRCm38:1:6249088:6274490:1 gene:ENSMUSG00000025907 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // chr1 // 100 // 38 // 11 // 11 // 0 /// AB050017 // GenBank // Mus musculus CC1 mRNA for coiled-coil protein, complete cds. // chr1 // 100 // 93 // 27 // 27 // 0 /// AB070619 // GenBank // Mus musculus Rb1cc1 mRNA for transcription factor, complete cds. // chr1 // 100 // 100 // 29 // 29 // 0 /// BC150774 // GenBank // Mus musculus RB1-inducible coiled-coil 1, mRNA (cDNA clone MGC:183685 IMAGE:9087685), complete cds. // chr1 // 100 // 83 // 24 // 24 // 0 /// XM_006495444 // RefSeq // PREDICTED: Mus musculus RB1-inducible coiled-coil 1 (Rb1cc1), transcript variant X2, mRNA. // chr1 // 66 // 66 // 19 // 29 // 1 /// ENSMUST00000162795 // ENSEMBL // havana:putative chromosome:GRCm38:1:6228002:6249029:1 gene:ENSMUSG00000025907 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 34 // 34 // 10 // 29 // 1 /// NONMMUT000060 // NONCODE // Non-coding transcript identified by NONCODE: Exonic // chr1 // 100 // 28 // 8 // 8 // 0 /// GENSCAN00000007874 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:6214132:6428628:1 transcript_biotype:protein_coding // chr1 // 59 // 59 // 17 // 29 // 1 main
10344674 NM_001195732,XM_006495555 chr1:6359331-6391104 chr1 NC_000067.6 + 6359331 6391104 25 NM_001195732 // Fam150a // family with sequence similarity 150, member A // 1 A1|1 // 620393 /// ENSMUST00000133144 // Fam150a // family with sequence similarity 150, member A // 1 A1|1 // 620393 /// XM_006495555 // Fam150a // family with sequence similarity 150, member A // 1 A1|1 // 620393 NM_001195732 // RefSeq // Mus musculus family with sequence similarity 150, member A (Fam150a), mRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// ENSMUST00000133144 // ENSEMBL // ensembl:known chromosome:GRCm38:1:6359331:6394731:1 gene:ENSMUSG00000087247 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// XM_006495555 // RefSeq // PREDICTED: Mus musculus family with sequence similarity 150, member A (Fam150a), transcript variant X1, mRNA. // chr1 // 76 // 76 // 19 // 25 // 1 /// GENSCAN00000007874 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:6214132:6428628:1 transcript_biotype:protein_coding // chr1 // 100 // 80 // 20 // 20 // 0 main
10344679 NM_001244692,NM_001244693,NM_173868,NR_045188,NR_045189,AB097467,AK122303,BC118528 chr1:6730051-6860940 chr1 NC_000067.6 + 6730051 6860940 25 NM_001244692 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// NM_001244693 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// NM_173868 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// NR_045188 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// NR_045189 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// ENSMUST00000043578 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// ENSMUST00000131494 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// ENSMUST00000140079 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// ENSMUST00000150761 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// ENSMUST00000151015 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// ENSMUST00000151281 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// ENSMUST00000163727 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// AB097467 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// AK122303 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 /// BC118528 // St18 // suppression of tumorigenicity 18 // 1 A1|1 // 240690 NM_001244692 // RefSeq // Mus musculus suppression of tumorigenicity 18 (St18), transcript variant 1, mRNA. // chr1 // 100 // 92 // 23 // 23 // 0 /// NM_001244693 // RefSeq // Mus musculus suppression of tumorigenicity 18 (St18), transcript variant 2, mRNA. // chr1 // 100 // 88 // 22 // 22 // 0 /// NM_173868 // RefSeq // Mus musculus suppression of tumorigenicity 18 (St18), transcript variant 3, mRNA. // chr1 // 100 // 92 // 23 // 23 // 0 /// NR_045188 // RefSeq // Mus musculus suppression of tumorigenicity 18 (St18), transcript variant 4, non-coding RNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// NR_045189 // RefSeq // Mus musculus suppression of tumorigenicity 18 (St18), transcript variant 5, non-coding RNA. // chr1 // 100 // 96 // 24 // 24 // 0 /// ENSMUST00000043578 // ENSEMBL // havana:known chromosome:GRCm38:1:6730051:6860940:1 gene:ENSMUSG00000033740 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// ENSMUST00000131494 // ENSEMBL // havana:known chromosome:GRCm38:1:6487331:6860940:1 gene:ENSMUSG00000033740 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 88 // 22 // 22 // 0 /// ENSMUST00000140079 // ENSEMBL // havana:known chromosome:GRCm38:1:6487231:6860934:1 gene:ENSMUSG00000033740 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 92 // 23 // 23 // 0 /// ENSMUST00000150761 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:1:6730101:6859470:1 gene:ENSMUSG00000033740 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 92 // 23 // 23 // 0 /// ENSMUST00000151015 // ENSEMBL // havana:known chromosome:GRCm38:1:6827897:6848984:1 gene:ENSMUSG00000033740 gene_biotype:protein_coding transcript_biotype:processed_transcript // chr1 // 100 // 32 // 8 // 8 // 0 /// ENSMUST00000151281 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:1:6730102:6858813:1 gene:ENSMUSG00000033740 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 84 // 21 // 21 // 0 /// ENSMUST00000163727 // ENSEMBL // ensembl:known chromosome:GRCm38:1:6737575:6860940:1 gene:ENSMUSG00000033740 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 92 // 23 // 23 // 0 /// AB097467 // GenBank // Mus musculus NZF-3 mRNA for neural zinc finger protein NZF-3, complete cds. // chr1 // 100 // 84 // 21 // 21 // 0 /// AK122303 // GenBank // Mus musculus mRNA for mKIAA0535 protein. // chr1 // 100 // 88 // 22 // 22 // 0 /// BC118528 // GenBank // Mus musculus suppression of tumorigenicity 18, mRNA (cDNA clone MGC:144173 IMAGE:40098452), complete cds. // chr1 // 100 // 92 // 23 // 23 // 0 /// GENSCAN00000007892 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:6778838:6894920:1 transcript_biotype:protein_coding // chr1 // 100 // 52 // 13 // 13 // 0 main
10344705 chr1:6873972-6874058 chr1 NC_000067.6 + 6873972 6874058 13 --- --- main
10344707 NM_183028,XM_006495535,XR_373188,AK161921,BC052741,BC064801,BC110360,BC117941,BC117942 chr1:7089150-7173628 chr1 NC_000067.6 + 7089150 7173628 17 NM_183028 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// XM_006495535 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// XR_373188 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// ENSMUST00000061280 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// ENSMUST00000182675 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// ENSMUST00000182892 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// ENSMUST00000183204 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// AK161921 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// BC052741 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// BC064801 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// BC110360 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// BC117941 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// BC117942 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// ENSMUST00000182114 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 /// ENSMUST00000182388 // Pcmtd1 // protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 // 1 A1|1 // 319263 NM_183028 // RefSeq // Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 (Pcmtd1), mRNA. // chr1 // 100 // 100 // 17 // 17 // 0 /// XM_006495535 // RefSeq // PREDICTED: Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 (Pcmtd1), transcript variant X1, mRNA. // chr1 // 100 // 76 // 13 // 13 // 0 /// XR_373188 // RefSeq // PREDICTED: Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 (Pcmtd1), transcript variant X5, misc_RNA. // chr1 // 100 // 76 // 13 // 13 // 0 /// ENSMUST00000061280 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:1:7088920:7173628:1 gene:ENSMUSG00000051285 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 17 // 17 // 0 /// ENSMUST00000182675 // ENSEMBL // havana:known chromosome:GRCm38:1:7147637:7170076:1 gene:ENSMUSG00000051285 gene_biotype:protein_coding transcript_biotype:nonsense_mediated_decay // chr1 // 100 // 59 // 10 // 10 // 0 /// ENSMUST00000182892 // ENSEMBL // havana:known chromosome:GRCm38:1:7160085:7172618:1 gene:ENSMUSG00000051285 gene_biotype:protein_coding transcript_biotype:retained_intron // chr1 // 100 // 76 // 13 // 13 // 0 /// ENSMUST00000183204 // ENSEMBL // havana:known chromosome:GRCm38:1:7160557:7172659:1 gene:ENSMUSG00000051285 gene_biotype:protein_coding transcript_biotype:retained_intron // chr1 // 100 // 76 // 13 // 13 // 0 /// AK161921 // GenBank HTC // Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430407P10 product:hypothetical protein, full insert sequence. // chr1 // 100 // 76 // 13 // 13 // 0 /// BC052741 // GenBank // Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1, mRNA (cDNA clone MGC:64637 IMAGE:6833458), complete cds. // chr1 // 100 // 76 // 13 // 13 // 0 /// BC064801 // GenBank // Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1, mRNA (cDNA clone MGC:76781 IMAGE:30067935), complete cds. // chr1 // 83 // 71 // 10 // 12 // 0 /// BC110360 // GenBank // Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1, mRNA (cDNA clone MGC:117877 IMAGE:5326388), complete cds. // chr1 // 100 // 100 // 17 // 17 // 0 /// BC117941 // GenBank // Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1, mRNA (cDNA clone MGC:144113 IMAGE:40097836), complete cds. // chr1 // 100 // 76 // 13 // 13 // 0 /// BC117942 // GenBank // Mus musculus protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1, mRNA (cDNA clone MGC:144114 IMAGE:40097839), complete cds. // chr1 // 100 // 76 // 13 // 13 // 0 /// ENSMUST00000182114 // ENSEMBL // havana:putative chromosome:GRCm38:1:7088930:7169598:1 gene:ENSMUSG00000051285 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 47 // 47 // 8 // 17 // 1 /// ENSMUST00000182388 // ENSEMBL // havana:known chromosome:GRCm38:1:7154867:7163371:1 gene:ENSMUSG00000051285 gene_biotype:protein_coding transcript_biotype:retained_intron // chr1 // 47 // 47 // 8 // 17 // 1 /// GENSCAN00000032349 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:7120309:7169882:1 transcript_biotype:protein_coding // chr1 // 59 // 59 // 10 // 17 // 1 main
10344713 NM_016661,XM_006543335,BC015304,BC086781,BC108367,L32836 chr1:7177739-7179037 chr1 NC_000067.6 + 7177739 7179037 32 NM_016661 // Ahcy // S-adenosylhomocysteine hydrolase // 2 H1|2 76.94 cM // 269378 /// XM_006543335 // LOC102643284 // adenosylhomocysteinase-like // --- // 102643284 /// ENSMUST00000029124 // Gm9826 // predicted gene 9826 // --- // --- /// ENSMUST00000054607 // Ahcy // S-adenosylhomocysteine hydrolase // 2 H1|2 76.94 cM // 269378 /// ENSMUST00000059524 // Ahcy // S-adenosylhomocysteine hydrolase // 2 H1|2 76.94 cM // 269378 /// ENSMUST00000137242 // Ahcy // S-adenosylhomocysteine hydrolase // 2 H1|2 76.94 cM // 269378 /// BC015304 // Ahcy // S-adenosylhomocysteine hydrolase // 2 H1|2 76.94 cM // 269378 /// BC086781 // Ahcy // S-adenosylhomocysteine hydrolase // 2 H1|2 76.94 cM // 269378 /// BC108367 // Ahcy // S-adenosylhomocysteine hydrolase // 2 H1|2 76.94 cM // 269378 /// L32836 // Ahcy // S-adenosylhomocysteine hydrolase // 2 H1|2 76.94 cM // 269378 /// ENSMUST00000118618 // Gm5638 // predicted gene 5638 // --- // --- NM_016661 // RefSeq // Mus musculus S-adenosylhomocysteine hydrolase (Ahcy), mRNA. // chr1 // 100 // 100 // 32 // 32 // 0 /// XM_006543335 // RefSeq // PREDICTED: Mus musculus adenosylhomocysteinase-like (LOC102643284), mRNA. // chr1 // 100 // 66 // 21 // 21 // 0 /// ENSMUST00000029124 // ENSEMBL // ensembl:known chromosome:GRCm38:1:7177739:7179037:1 gene:ENSMUSG00000048538 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // chr1 // 100 // 100 // 32 // 32 // 0 /// ENSMUST00000054607 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:2:155059310:155074497:-1 gene:ENSMUSG00000027597 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 32 // 32 // 0 /// ENSMUST00000059524 // ENSEMBL // ensembl:known chromosome:GRCm38:16:46152997:46155077:-1 gene:ENSMUSG00000048087 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 32 // 32 // 0 /// ENSMUST00000137242 // ENSEMBL // havana:putative chromosome:GRCm38:2:155065660:155074447:-1 gene:ENSMUSG00000027597 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 31 // 10 // 10 // 0 /// BC015304 // GenBank // Mus musculus S-adenosylhomocysteine hydrolase, mRNA (cDNA clone MGC:19228 IMAGE:4241917), complete cds. // chr1 // 100 // 100 // 32 // 32 // 0 /// BC086781 // GenBank // Mus musculus S-adenosylhomocysteine hydrolase, mRNA (cDNA clone MGC:102079 IMAGE:6828058), complete cds. // chr1 // 100 // 100 // 32 // 32 // 0 /// BC108367 // GenBank // Mus musculus S-adenosylhomocysteine hydrolase, mRNA (cDNA clone MGC:118063 IMAGE:4457523), complete cds. // chr1 // 100 // 100 // 32 // 32 // 0 /// L32836 // GenBank // Mus musculus (clone C7/B9) S-adenosyl homocysteine hydrolase (ahcy) mRNA, complete cds. // chr1 // 100 // 100 // 32 // 32 // 0 /// ENSMUST00000118618 // ENSEMBL // havana:known chromosome:GRCm38:X:68629428:68630685:1 gene:ENSMUSG00000081084 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // chr1 // 48 // 91 // 14 // 29 // 0 /// GENSCAN00000003625 // ENSEMBL // cdna:genscan chromosome:GRCm38:2:155060449:155074392:-1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 32 // 32 // 0 /// GENSCAN00000007067 // ENSEMBL // cdna:genscan chromosome:GRCm38:16:46153714:46155012:-1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 32 // 32 // 0 /// GENSCAN00000028211 // ENSEMBL // cdna:genscan chromosome:GRCm38:X:68613847:68630350:1 transcript_biotype:protein_coding // chr1 // 77 // 41 // 10 // 13 // 0 /// GENSCAN00000032342 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:7177739:7179037:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 32 // 32 // 0 main
10344715 XR_398548,AK036865 chr1:7497999-7498300 chr1 NC_000067.6 + 7497999 7498300 25 XR_398548 // LOC102632303 // uncharacterized LOC102632303 // --- // 102632303 /// AK036865 // LOC102632303 // uncharacterized LOC102632303 // --- // 102632303 XR_398548 // RefSeq // PREDICTED: Mus musculus uncharacterized LOC102632303 (LOC102632303), ncRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// AK036865 // GenBank HTC // Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930020B22 product:hypothetical protein, full insert sequence. // chr1 // 92 // 100 // 23 // 25 // 0 /// KnowTID_00000008 // Luo lincRNA // Non-coding transcript identified by Luo, et al. // chr1 // 100 // 100 // 25 // 25 // 0 /// NONMMUT000084 // NONCODE // Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 25 // 25 // 0 main
10344717 chr1:8816138-8816247 chr1 NC_000067.6 + 8816138 8816247 24 ENSMUST00000102181 // Gm24276 // predicted gene, 24276 // --- // --- ENSMUST00000102181 // ENSEMBL // ncrna:known chromosome:GRCm38:1:8816138:8816247:1 gene:ENSMUSG00000076135 gene_biotype:miRNA transcript_biotype:miRNA // chr1 // 100 // 100 // 24 // 24 // 0 /// NONMMUT000092 // NONCODE // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 24 // 24 // 0 main
10344719 NM_011279,XM_006543924,AF092877,BC011127,BC089382 chr1:8856763-8857104 chr1 NC_000067.6 + 8856763 8857104 47 ENSMUST00000151704 // Gm6152 // predicted gene 6152 // --- // --- /// ENSMUST00000054760 // Gm7075 // predicted gene 7075 // --- // --- /// NM_011279 // Rnf7 // ring finger protein 7 // 9|9 D2.3 // 19823 /// XM_006543924 // LOC102642416 // RING-box protein 2-like // --- // 102642416 /// ENSMUST00000057500 // Rnf7 // ring finger protein 7 // 9|9 D2.3 // 19823 /// ENSMUST00000071301 // Rnf7 // ring finger protein 7 // 9|9 D2.3 // 19823 /// AF092877 // Rnf7 // ring finger protein 7 // 9|9 D2.3 // 19823 /// BC011127 // Rnf7 // ring finger protein 7 // 9|9 D2.3 // 19823 /// ENSMUST00000128955 // Rnf7 // ring finger protein 7 // 9|9 D2.3 // 19823 ENSMUST00000151704 // ENSEMBL // havana:known chromosome:GRCm38:1:8855928:8856267:-1 gene:ENSMUSG00000086195 gene_biotype:pseudogene transcript_biotype:processed_pseudogene // chr1 // 89 // 100 // 42 // 47 // 0 /// ENSMUST00000054760 // ENSEMBL // ensembl:known chromosome:GRCm38:10:63421401:63421739:-1 gene:ENSMUSG00000048185 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 44 // 96 // 20 // 45 // 0 /// NM_011279 // RefSeq // Mus musculus ring finger protein 7 (Rnf7), mRNA. // chr1 // 23 // 100 // 11 // 47 // 0 /// XM_006543924 // RefSeq // PREDICTED: Mus musculus RING-box protein 2-like (LOC102642416), mRNA. // chr1 // 21 // 91 // 9 // 43 // 0 /// ENSMUST00000057500 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:9:96470937:96478675:-1 gene:ENSMUSG00000051234 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 19 // 100 // 9 // 47 // 0 /// ENSMUST00000071301 // ENSEMBL // havana:putative chromosome:GRCm38:9:96471763:96478610:-1 gene:ENSMUSG00000051234 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 21 // 100 // 10 // 47 // 0 /// AF092877 // GenBank // Mus musculus zinc RING finger protein SAG mRNA, complete cds. // chr1 // 19 // 100 // 9 // 47 // 0 /// BC011127 // GenBank // Mus musculus ring finger protein 7, mRNA (cDNA clone IMAGE:4194107), complete cds. // chr1 // 23 // 100 // 11 // 47 // 0 /// ENSMUST00000128955 // ENSEMBL // havana:known chromosome:GRCm38:9:96473862:96478588:-1 gene:ENSMUSG00000051234 gene_biotype:protein_coding transcript_biotype:processed_transcript // chr1 // 21 // 21 // 10 // 47 // 1 /// NONMMUT000093 // NONCODE // Non-coding transcript identified by NONCODE: Sense No Exonic // chr1 // 89 // 100 // 42 // 47 // 0 /// GENSCAN00000011398 // ENSEMBL // cdna:genscan chromosome:GRCm38:10:63421401:63421739:-1 transcript_biotype:protein_coding // chr1 // 44 // 96 // 20 // 45 // 0 /// BC089382 // GenBank // Mus musculus cDNA clone IMAGE:30628799. // chr1 // 21 // 100 // 10 // 47 // 0 /// GENSCAN00000052550 // ENSEMBL // cdna:genscan chromosome:GRCm38:1:8847114:8857042:1 transcript_biotype:protein_coding // chr1 // 51 // 51 // 24 // 47 // 1 /// GENSCAN00000054518 // ENSEMBL // cdna:genscan chromosome:GRCm38:13:117229368:117249474:1 transcript_biotype:protein_coding // chr1 // 23 // 23 // 11 // 47 // 1 /// NONMMUT070539 // NONCODE // Non-coding transcript identified by NONCODE: Exonic // chr1 // 21 // 21 // 10 // 47 // 1 main
10344721 chr1:9458670-9458772 chr1 NC_000067.6 + 9458670 9458772 25 ENSMUST00000083691 // Gm24765 // predicted gene, 24765 // --- // --- ENSMUST00000083691 // ENSEMBL // ncrna:known chromosome:GRCm38:1:9458670:9458772:1 gene:ENSMUSG00000065625 gene_biotype:snRNA transcript_biotype:snRNA // chr1 // 100 // 100 // 25 // 25 // 0 /// NONMMUT000099 // NONCODE // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 25 // 25 // 0 main
10344723 NM_021511,BC003481,BC055925 chr1:9545426-9547452 chr1 NC_000067.6 + 9545426 9547452 9 NM_021511 // Rrs1 // RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) // 1 A2|1 2.08 cM // 59014 /// ENSMUST00000072079 // Rrs1 // RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) // 1 A2|1 2.08 cM // 59014 /// BC003481 // Rrs1 // RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) // 1 A2|1 2.08 cM // 59014 /// BC055925 // Rrs1 // RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) // 1 A2|1 2.08 cM // 59014 NM_021511 // RefSeq // Mus musculus RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) (Rrs1), mRNA. // chr1 // 100 // 100 // 9 // 9 // 0 /// ENSMUST00000072079 // ENSEMBL // ensembl_havana_transcript:known chromosome:GRCm38:1:9545408:9547455:1 gene:ENSMUSG00000061024 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 9 // 9 // 0 /// BC003481 // GenBank // Mus musculus RRS1 ribosome biogenesis regulator homolog (S. cerevisiae), mRNA (cDNA clone MGC:6914 IMAGE:2811004), complete cds. // chr1 // 100 // 100 // 9 // 9 // 0 /// BC055925 // GenBank // Mus musculus RRS1 ribosome biogenesis regulator homolog (S. cerevisiae), mRNA (cDNA clone MGC:68331 IMAGE:4235851), complete cds. // chr1 // 100 // 100 // 9 // 9 // 0 main

Total number of rows: 35557

Table truncated, full table size 86697 Kbytes.






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