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Sample GSM252731 Query DataSets for GSM252731
Status Public on Dec 04, 2008
Title Mutant hypothyroid MH_5
Sample type RNA
 
Source name Mutant hypothyroid
Organism Mus musculus
Characteristics Mouse liver total RNA; mixed strain background (B6;129S); NCoRloxP/loxP-AlbuminCre;
mice were put on a low iodine diet supplemented with 0.15% PTU (LoI/PTU-Harlan Teklad TD.95125) for 3 weeks.
Extracted molecule total RNA
Extraction protocol Total RNA from was isolated using Trizol as described above and further purified with RNeasy Mini kit per manufacturer’s instructions (Qiagen, Valencia, CA). 200 ng total RNA was then used for GeneChip analysis. Preparation of terminal-labeled cDNA, hybridization to genome-wide murine Gene Level 1.0 ST GeneChips (Affymetrix, Santa Clara, CA, USA) and scanning of the arrays were carried out according to manufacturer’s protocols (https://www.affymetrix.com).
Label Biotin
Label protocol WT labeling kit (www.affymetrix.com)
 
Hybridization protocol affymetrix
Scan protocol affymetrix
Description affymetrix
Data processing RMA signal intensity calculation
 
Submission date Dec 21, 2007
Last update date Dec 03, 2008
Contact name Martin Bilban
E-mail(s) [email protected]
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL6246
Series (1)
GSE10001 Gene expression profiling in NCoR deficient mouse livers

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2)

Data table
ID_REF VALUE
10338001 11.38352
10338002 6.632651
10338003 9.953591
10338004 8.710363
10338005 1.55302
10338006 1.794105
10338007 2.06383
10338008 3.159495
10338009 8.78168
10338010 1.586807
10338011 5.74263
10338012 1.695488
10338013 1.488576
10338014 1.533434
10338015 1.527965
10338016 7.93937
10338017 12.54679
10338018 7.021244
10338019 5.009706
10338020 8.704372

Total number of rows: 35557

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM252731.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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