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Sample GSM252733 Query DataSets for GSM252733
Status Public on Dec 04, 2008
Title Mutant hypothyroid MH_7
Sample type RNA
 
Source name Mutant hypothyroid
Organism Mus musculus
Characteristics Mouse liver total RNA; mixed strain background (B6;129S); NCoRloxP/loxP-AlbuminCre;
mice were put on a low iodine diet supplemented with 0.15% PTU (LoI/PTU-Harlan Teklad TD.95125) for 3 weeks.
Extracted molecule total RNA
Extraction protocol Total RNA from was isolated using Trizol as described above and further purified with RNeasy Mini kit per manufacturer’s instructions (Qiagen, Valencia, CA). 200 ng total RNA was then used for GeneChip analysis. Preparation of terminal-labeled cDNA, hybridization to genome-wide murine Gene Level 1.0 ST GeneChips (Affymetrix, Santa Clara, CA, USA) and scanning of the arrays were carried out according to manufacturer’s protocols (https://www.affymetrix.com).
Label Biotin
Label protocol WT labeling kit (www.affymetrix.com)
 
Hybridization protocol affymetrix
Scan protocol affymetrix
Description affymetrix
Data processing RMA signal intensity calculation
 
Submission date Dec 21, 2007
Last update date Dec 03, 2008
Contact name Martin Bilban
E-mail(s) [email protected]
Phone ++43 (0)1 40400 6441
Organization name Medical University of Vienna
Department
Street address
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platform ID GPL6246
Series (1)
GSE10001 Gene expression profiling in NCoR deficient mouse livers

Data table header descriptions
ID_REF
VALUE RMA signal intensity (log2)

Data table
ID_REF VALUE
10338001 11.65698
10338002 6.139822
10338003 10.26719
10338004 9.227127
10338005 1.666012
10338006 1.885108
10338007 2.131352
10338008 2.931723
10338009 8.489247
10338010 1.674971
10338011 5.264275
10338012 1.765846
10338013 1.555096
10338014 1.57957
10338015 1.59471
10338016 7.5007
10338017 12.85718
10338018 6.556712
10338019 4.572199
10338020 8.374582

Total number of rows: 35557

Table truncated, full table size 621 Kbytes.




Supplementary file Size Download File type/resource
GSM252733.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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