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GEO accession:
Sample GSM259102
Query DataSets for GSM259102
Status
Public on Mar 20, 2009
Title
FFPE-Duke B, Cancer, Sample KDSZBANI, Chip R38365
Sample type
RNA
Source name
colon
Organism
Homo sapiens
Characteristics
DNA CHIP2 ID: R38365
Image File: T00296785_S01
Sample ID: KDSZBANI
Sample stage: FFPE-Duke B
Cancer: Yes
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from cell samples using the Trizol Kit.
Label
Cy3
Label protocol
Approximately 5 µg of total RNA was processed to produce Cy3 -labeled cRNA targets.
Hybridization protocol
standard Ambion procedures
Scan protocol
standard Agilent 2505B confocol laser scanner
Description
colon tissue
Data processing
Codelink Expression Analysis software, quantile normalization
Submission date
Jan 24, 2008
Last update date
Mar 20, 2009
Contact name
Jack Yu
E-mail(s)
[email protected]
Phone
858-320-3362
Fax
858-784-3182
Organization name
Veridex, LLC
Street address
3210 Merryfield Row
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL4411
Series (1)
GSE10259
Characterization of microRNA expression in colorectal cancer
Data table header descriptions
ID_REF
VALUE
quantile normalized signal intensity
Data table
ID_REF
VALUE
Control_1
38602.364
Control_2
41.066
Control_3
76.770
Control_4
47.198
hsa_let_7a
19882.793
hsa_let_7b
10846.962
hsa_let_7c
14428.302
hsa_let_7d
8197.144
hsa_let_7e
1575.757
hsa_let_7f
4792.015
hsa_let_7g
2482.707
hsa_let_7i
1931.727
hsa_miR_1
33.047
hsa_miR_100
386.505
hsa_miR_101
44.350
hsa_miR_103
2728.547
hsa_miR_105
35.731
hsa_miR_106a
4386.483
hsa_miR_106b
928.286
hsa_miR_107
2488.696
Total number of rows:
389
Table truncated, full table size
7 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM259102.txt.gz
42.1 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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