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GEO accession:
Sample GSM259115
Query DataSets for GSM259115
Status
Public on Mar 20, 2009
Title
Duke B, Cancer, Sample KKFKYAIU, Chip R38378
Sample type
RNA
Source name
colon
Organism
Homo sapiens
Characteristics
DNA CHIP2 ID: R38378
Image File: T00296800_S01
Sample ID: KKFKYAIU
Sample stage: Duke B
Cancer: Yes
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from cell samples using the Trizol Kit.
Label
Cy3
Label protocol
Approximately 5 µg of total RNA was processed to produce Cy3 -labeled cRNA targets.
Hybridization protocol
standard Ambion procedures
Scan protocol
standard Agilent 2505B confocol laser scanner
Description
colon tissue
Data processing
Codelink Expression Analysis software, quantile normalization
Submission date
Jan 24, 2008
Last update date
Mar 20, 2009
Contact name
Jack Yu
E-mail(s)
[email protected]
Phone
858-320-3362
Fax
858-784-3182
Organization name
Veridex, LLC
Street address
3210 Merryfield Row
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL4411
Series (1)
GSE10259
Characterization of microRNA expression in colorectal cancer
Data table header descriptions
ID_REF
VALUE
quantile normalized signal intensity
Data table
ID_REF
VALUE
Control_1
36655.877
Control_2
66.168
Control_3
47.104
Control_4
45.548
hsa_let_7a
16514.937
hsa_let_7b
11087.514
hsa_let_7c
11328.451
hsa_let_7d
7496.964
hsa_let_7e
2184.861
hsa_let_7f
3137.790
hsa_let_7g
2736.660
hsa_let_7i
5173.680
hsa_miR_1
209.098
hsa_miR_100
1123.980
hsa_miR_101
135.695
hsa_miR_103
1824.163
hsa_miR_105
44.455
hsa_miR_106a
1903.911
hsa_miR_106b
1047.313
hsa_miR_107
1862.881
Total number of rows:
389
Table truncated, full table size
7 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM259115.txt.gz
42.3 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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