GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM259137
Query DataSets for GSM259137
Status
Public on Mar 20, 2009
Title
Duke B, Cancer, Sample 5CYDKA5B, Chip R38400
Sample type
RNA
Source name
colon
Organism
Homo sapiens
Characteristics
DNA CHIP2 ID: R38400
Image File: T00296710_S01
Sample ID: 5CYDKA5B
Sample stage: Duke B
Cancer: Yes
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from cell samples using the Trizol Kit.
Label
Cy3
Label protocol
Approximately 5 µg of total RNA was processed to produce Cy3 -labeled cRNA targets.
Hybridization protocol
standard Ambion procedures
Scan protocol
standard Agilent 2505B confocol laser scanner
Description
colon tissue
Data processing
Codelink Expression Analysis software, quantile normalization
Submission date
Jan 24, 2008
Last update date
Mar 20, 2009
Contact name
Jack Yu
E-mail(s)
[email protected]
Phone
858-320-3362
Fax
858-784-3182
Organization name
Veridex, LLC
Street address
3210 Merryfield Row
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL4411
Series (1)
GSE10259
Characterization of microRNA expression in colorectal cancer
Data table header descriptions
ID_REF
VALUE
quantile normalized signal intensity
Data table
ID_REF
VALUE
Control_1
35550.251
Control_2
12.625
Control_3
32.947
Control_4
54.216
hsa_let_7a
13596.118
hsa_let_7b
9305.572
hsa_let_7c
8025.320
hsa_let_7d
4710.483
hsa_let_7e
741.355
hsa_let_7f
2176.508
hsa_let_7g
2417.585
hsa_let_7i
1893.005
hsa_miR_1
46.603
hsa_miR_100
166.419
hsa_miR_101
134.489
hsa_miR_103
2603.615
hsa_miR_105
40.458
hsa_miR_106a
3585.329
hsa_miR_106b
1585.403
hsa_miR_107
2353.706
Total number of rows:
389
Table truncated, full table size
7 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM259137.txt.gz
42.3 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
