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GEO accession:
Sample GSM259140
Query DataSets for GSM259140
Status
Public on Mar 20, 2009
Title
Duke C, Cancer, Sample 8Q9TRAEE, Chip R38403
Sample type
RNA
Source name
colon
Organism
Homo sapiens
Characteristics
DNA CHIP2 ID: R38403
Image File: T00296715_S01
Sample ID: 8Q9TRAEE
Sample stage: Duke C
Cancer: Yes
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from cell samples using the Trizol Kit.
Label
Cy3
Label protocol
Approximately 5 µg of total RNA was processed to produce Cy3 -labeled cRNA targets.
Hybridization protocol
standard Ambion procedures
Scan protocol
standard Agilent 2505B confocol laser scanner
Description
colon tissue
Data processing
Codelink Expression Analysis software, quantile normalization
Submission date
Jan 24, 2008
Last update date
Mar 20, 2009
Contact name
Jack Yu
E-mail(s)
[email protected]
Phone
858-320-3362
Fax
858-784-3182
Organization name
Veridex, LLC
Street address
3210 Merryfield Row
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL4411
Series (1)
GSE10259
Characterization of microRNA expression in colorectal cancer
Data table header descriptions
ID_REF
VALUE
quantile normalized signal intensity
Data table
ID_REF
VALUE
Control_1
38602.364
Control_2
50.094
Control_3
26.529
Control_4
53.570
hsa_let_7a
16378.298
hsa_let_7b
18741.992
hsa_let_7c
14873.558
hsa_let_7d
6781.773
hsa_let_7e
1873.788
hsa_let_7f
3042.629
hsa_let_7g
2904.165
hsa_let_7i
2358.998
hsa_miR_1
40.509
hsa_miR_100
1393.468
hsa_miR_101
133.794
hsa_miR_103
3031.122
hsa_miR_105
59.599
hsa_miR_106a
2979.759
hsa_miR_106b
1181.107
hsa_miR_107
2445.698
Total number of rows:
389
Table truncated, full table size
7 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM259140.txt.gz
42.0 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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