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GEO accession:
Sample GSM259145
Query DataSets for GSM259145
Status
Public on Mar 20, 2009
Title
Duke C, Cancer, Sample POELPAF3, Chip R38408
Sample type
RNA
Source name
colon
Organism
Homo sapiens
Characteristics
DNA CHIP2 ID: R38408
Image File: T00296723_S01
Sample ID: POELPAF3
Sample stage: Duke C
Cancer: Yes
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from cell samples using the Trizol Kit.
Label
Cy3
Label protocol
Approximately 5 µg of total RNA was processed to produce Cy3 -labeled cRNA targets.
Hybridization protocol
standard Ambion procedures
Scan protocol
standard Agilent 2505B confocol laser scanner
Description
colon tissue
Data processing
Codelink Expression Analysis software, quantile normalization
Submission date
Jan 24, 2008
Last update date
Mar 20, 2009
Contact name
Jack Yu
E-mail(s)
[email protected]
Phone
858-320-3362
Fax
858-784-3182
Organization name
Veridex, LLC
Street address
3210 Merryfield Row
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL4411
Series (1)
GSE10259
Characterization of microRNA expression in colorectal cancer
Data table header descriptions
ID_REF
VALUE
quantile normalized signal intensity
Data table
ID_REF
VALUE
Control_1
38602.364
Control_2
45.829
Control_3
25.223
Control_4
33.721
hsa_let_7a
14939.400
hsa_let_7b
8807.543
hsa_let_7c
7753.359
hsa_let_7d
4423.748
hsa_let_7e
893.049
hsa_let_7f
2364.920
hsa_let_7g
2569.199
hsa_let_7i
2553.313
hsa_miR_1
51.538
hsa_miR_100
446.428
hsa_miR_101
115.534
hsa_miR_103
2411.360
hsa_miR_105
34.776
hsa_miR_106a
5850.468
hsa_miR_106b
1747.738
hsa_miR_107
2125.458
Total number of rows:
389
Table truncated, full table size
7 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM259145.txt.gz
42.5 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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