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GEO accession:
Sample GSM259153
Query DataSets for GSM259153
Status
Public on Mar 20, 2009
Title
Duke C, Cancer, Sample ZERO1AZP, Chip R38416
Sample type
RNA
Source name
colon
Organism
Homo sapiens
Characteristics
DNA CHIP2 ID: R38416
Image File: T00296767_S01
Sample ID: ZERO1AZP
Sample stage: Duke C
Cancer: Yes
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted from cell samples using the Trizol Kit.
Label
Cy3
Label protocol
Approximately 5 µg of total RNA was processed to produce Cy3 -labeled cRNA targets.
Hybridization protocol
standard Ambion procedures
Scan protocol
standard Agilent 2505B confocol laser scanner
Description
colon tissue
Data processing
Codelink Expression Analysis software, quantile normalization
Submission date
Jan 24, 2008
Last update date
Mar 20, 2009
Contact name
Jack Yu
E-mail(s)
[email protected]
Phone
858-320-3362
Fax
858-784-3182
Organization name
Veridex, LLC
Street address
3210 Merryfield Row
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL4411
Series (1)
GSE10259
Characterization of microRNA expression in colorectal cancer
Data table header descriptions
ID_REF
VALUE
quantile normalized signal intensity
Data table
ID_REF
VALUE
Control_1
36460.420
Control_2
26.955
Control_3
23.904
Control_4
25.946
hsa_let_7a
10449.683
hsa_let_7b
6575.075
hsa_let_7c
6204.239
hsa_let_7d
3090.449
hsa_let_7e
928.286
hsa_let_7f
1987.950
hsa_let_7g
1815.583
hsa_let_7i
2348.260
hsa_miR_1
81.407
hsa_miR_100
390.084
hsa_miR_101
95.503
hsa_miR_103
2078.886
hsa_miR_105
43.127
hsa_miR_106a
3507.165
hsa_miR_106b
1285.455
hsa_miR_107
2080.791
Total number of rows:
389
Table truncated, full table size
7 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM259153.txt.gz
42.5 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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