|
| Status |
Public on Aug 15, 2009 |
| Title |
patient109;pretreatment;female;breast tumor |
| Sample type |
RNA |
| |
|
| Source name |
human breast tumor
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
tissue: breast tumor
treatment: pretreatment
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 5 ug of cRNA were hybridized on U133 GeneChip following the recommended procedures. GeneChips were washed and stained according to Affymetrix protocol EukGE-2v4.
|
| Scan protocol |
GeneChips were scanned using an Affymetrix GeneChip Scanner (Agilent).
|
| Description |
breast tumor biopsy
|
| Data processing |
dChip version2006
|
| |
|
| Submission date |
Jan 25, 2008 |
| Last update date |
Jul 30, 2014 |
| Contact name |
Chad Creighton |
| E-mail(s) |
[email protected]
|
| Organization name |
Baylor College of Medicine
|
| Department |
Biostatistics, Ducan Cancer Center
|
| Street address |
One Baylor Plaza, Mail Stop: BCM305
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE10281 |
Letrozole (Femara) early response to treatment |
|
