NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2779709 Query DataSets for GSM2779709
Status Public on May 08, 2018
Title Spleen_GR-C3 knockin_LPS_3hr_rep3
Sample type RNA
 
Source name spleen, GR-C3 knockin, LPS-treated, 3hour
Organism Mus musculus
Characteristics gender: male
genetic background: C57BL/6
gender: GR-C3 knockin
agent: LPS
time: 3hour
tissue: spleen
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from WT and rescued GR-C3 knockin spleens using TRIzol reagent according to the manufacturer's instructions.
Label biotin
Label protocol 100 ng of each total RNA sample was labeled according to the manufacturer's instructions.
 
Hybridization protocol Hybridization was done according to the manufacturer's instructions.
Scan protocol Gene expression was quantified on the nCounter Digital AnalyzerTM.
Description C3-LPS-3
Data processing Data were normalized utilizing the manufacturer’s positive and negative experimental control probes, as well as all 4 housekeeping genes (G6pdx, Ppia, Oaz1, and Rpl19)
 
Submission date Sep 11, 2017
Last update date May 08, 2018
Contact name NIEHS Microarray Core
E-mail(s) [email protected], [email protected]
Organization name NIEHS
Department DIR
Lab Microarray Core
Street address 111 T.W. Alexander Drive
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL19964
Series (1)
GSE103721 Inflammatory Gene Changes in Spleens from WT and Rescued GR-C3 Knockin Mice Treated with LPS

Data table header descriptions
ID_REF
VALUE normalized signal intensity

Data table
ID_REF VALUE
Abcb10 278.38
Abcb1a 380.36
Abcf1 433.38
Abl1 39.77
Adal 58.12
Ahr 376.28
Aicda 127.46
Aire 29.57
App 1616.26
Arhgdib 2341.28
Atg16l1 514.96
Atm 130.52
B2m 54269.45
Batf 2475.88
Batf3 158.06
Bax 527.19
Bcap31 479.27
Bcl2 743.38
Bcl3 1197.15
Bcl6 403.81

Total number of rows: 561

Table truncated, full table size 6 Kbytes.




Supplementary file Size Download File type/resource
GSM2779709_20141107_nano21car2_C3-LPS-3_03.RCC.gz 6.4 Kb (ftp)(http) RCC
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap