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| Status |
Public on Dec 15, 2017 |
| Title |
B16.PMIG.TIL#1 |
| Sample type |
SRA |
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| Source name |
Tumor P14 control
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| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
age: 6-16 Weeks
tissue: Tumor
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted in TRIZoL reagent
PrepX RNA-seq libaray preparation kit (Integenex)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Data processing |
Tophat
HT-Seq Count
DESeq from BioConductor
Genome_build: UCSC mm10
Supplementary_files_format_and_content: gct
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| Submission date |
Nov 22, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
John Justin Milner |
| E-mail(s) |
[email protected]
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| Organization name |
UCSD
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| Lab |
Goldrath Lab
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| Street address |
9500 Gilman Dr. MC0377
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platform ID |
GPL17021 |
| Series (2) |
| GSE107289 |
RNA-seq of tumor residing CD8+ T cells overexpressing Runx3 |
| GSE107395 |
Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours |
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| Relations |
| BioSample |
SAMN08096501 |
| SRA |
SRX3421601 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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