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| Status |
Public on Dec 15, 2017 |
| Title |
D7_spleen_ATAC-seq_rep1 |
| Sample type |
SRA |
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| Source name |
D7 Spleen P14
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| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
age: 6-16 Weeks
tissue: Spleen
cell population: CD8+ T cell
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Single cell suspensions from the spleen, epithelium, or kidney of the small intestine were sorted by FACS.
The ATAC-Seq library was generated by Nextera sample prep kit (Illumina).
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| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 2500 |
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| Description |
Sp-d7_num1_S5_L007_R1_001.fastq.gz
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| Data processing |
Reads were aligned to mm10 by bowtie.
Only unique reads were kept.
Genome_build: mm10
Supplementary_files_format_and_content: bedgraph
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| Submission date |
Nov 27, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
John Justin Milner |
| E-mail(s) |
[email protected]
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| Organization name |
UCSD
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| Lab |
Goldrath Lab
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| Street address |
9500 Gilman Dr. MC0377
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| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platform ID |
GPL17021 |
| Series (2) |
| GSE107373 |
ATAC-Seq of CD8+ T cell subsets during LCMV infection |
| GSE107395 |
Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours |
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| Relations |
| BioSample |
SAMN08100967 |
| SRA |
SRX3424190 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2865601_ATAC_Sp_1.ucsc.bedGraph.gz |
103.8 Mb |
(ftp)(http) |
BEDGRAPH |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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