|
| Status |
Public on Dec 15, 2017 |
| Title |
D7_IEL_ATAC-seq_rep2 |
| Sample type |
SRA |
| |
|
| Source name |
D7 IEL P14
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
age: 6-16 Weeks
tissue: Small Intestine Epithelium
cell population: CD8+ T cell
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Single cell suspensions from the spleen, epithelium, or kidney of the small intestine were sorted by FACS.
The ATAC-Seq library was generated by Nextera sample prep kit (Illumina).
|
| |
|
| Library strategy |
ATAC-seq |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
IEL-d7_num2_S2_L007_R1_001.fastq.gz
|
| Data processing |
Reads were aligned to mm10 by bowtie.
Only unique reads were kept.
Genome_build: mm10
Supplementary_files_format_and_content: bedgraph
|
| |
|
| Submission date |
Nov 27, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
John Justin Milner |
| E-mail(s) |
[email protected]
|
| Organization name |
UCSD
|
| Lab |
Goldrath Lab
|
| Street address |
9500 Gilman Dr. MC0377
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
| |
|
| Platform ID |
GPL17021 |
| Series (2) |
| GSE107373 |
ATAC-Seq of CD8+ T cell subsets during LCMV infection |
| GSE107395 |
Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours |
|
| Relations |
| BioSample |
SAMN08100964 |
| SRA |
SRX3424193 |
