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Sample GSM305573 Query DataSets for GSM305573
Status Public on Jan 08, 2009
Title AJR 40
Sample type RNA
 
Source name hepatic tissue, A/J, prenatal undernutrition
Organism Mus musculus
Characteristics male 7month old offspring
Treatment protocol pregnant mice were either treated as controls (C) and fed ad libitum for the duration of pregnancy or were treated as restricted (R) and subjected to undernutrition restriction diet. Whole mouse livers were extracted from 27 week old offspring from C or R treated mothers and flash frozen in liquid nitrogen.
Extracted molecule total RNA
Extraction protocol Total Hepatic RNA was extracted from the frozen tissue using RNeasy Mini Kits with on-column RNase-free DNase Kit digestion (Quigen)
Label Biotin
Label protocol standard protocols for Affymetrix GeneChip® Mouse Gene 1.0 ST Array
 
Hybridization protocol standard protocols for Affymetrix GeneChip® Mouse Gene 1.0 ST Array
Scan protocol standard protocols for Affymetrix GeneChip™3000 7G laser confocal slide scanner
Description no additional information
Data processing standard protocols for Affymetrix GeneChip® Mouse Gene 1.0 ST Array using Affymetrix Expression Console software
 
Submission date Jul 15, 2008
Last update date Dec 29, 2008
Contact name brian knight
E-mail(s) [email protected]
Phone 4165868224
Organization name samuel lunenfeld research institute
Street address 25 orde st
City toronto
ZIP/Postal code m5s3a6
Country Canada
 
Platform ID GPL6246
Series (1)
GSE12117 Role of inherent strain differences in prenatally induced differential metabolic syndrome phenotype and gene expression

Data table header descriptions
ID_REF
VALUE signal intensity in Affymetrix Expression Console was normalized using RMA algorithm

Data table
ID_REF VALUE
10338001 11.87981
10338003 10.28147
10338004 8.956412
10338017 12.68383
10338025 9.093343
10338026 13.08005
10338029 9.650991
10338035 8.790587
10338036 9.222573
10338037 3.244294
10338041 10.83704
10338042 10.21344
10338044 11.8225
10338047 6.348053
10338056 1.80751
10338059 13.13457
10338060 4.161632
10338063 2.397782
10338064 5.739209
10338065 6.298327

Total number of rows: 35512

Table truncated, full table size 620 Kbytes.




Supplementary file Size Download File type/resource
GSM305573.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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