|
| Status |
Public on Jan 08, 2019 |
| Title |
FFPE X219016692 [X89_X.172_plate2NHSII] |
| Sample type |
RNA |
| |
|
| Source name |
breast tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tumor tumoradj: tumor-adjacent normal
cohort: NHS2
microarray batch: 14
age at dx: 44.91666667
dx year: 1998
tumor size: 3
grade: 3
Stage: 2
surgery: lump
treatment: mixed
recurrence: 0
recurrence months: 234
distant recurrence: 0
distant recurrence months: 234
er ihc: 0
pr ihc: 0
her2 ihc: 1
ki67 ihc: NA
molecularsubtype byihc: Her2
molecularsubtype pam50 modifiedmedianmethod: Normal
proliferationscore modifiedmedianmethod: -0.480115935001109
rorptscore modifiedmedianmethod: 33.7881805958837
rorptgroup modifiedmedianmethod: med
molecularsubtype pam50 subgroupspecificmethod: Normal
proliferationscore subgroupspecificmethod: -0.40982670264903
rorptscore subgroupspecificmethod: 38.8730967664847
rorptgroup subgroupspecificmethod: med
sample id: X219016692
nhs_cohort: NHS2
bmi_2yrs_bef_dx: 29.95
avg_bodysize_age1020: 3
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Formalin-fixed paraffin-embedded tissue blocks
Qiagen AllPrep RNA isolation kit was used to isolate total RNA
|
| Label |
biotin
|
| Label protocol |
Labeling was performed according to standard Affymetrix protocols
|
| |
|
| Hybridization protocol |
Hybridization was performed according to standard protocols
|
| Scan protocol |
Scanning was performed according to standard protocols
|
| Description |
X89_X.172_plate2NHSII
|
| Data processing |
Gene expression data were normalized and summarized using Robust Multiarray Average (RMA)
|
| |
|
| Submission date |
Jun 11, 2018 |
| Last update date |
Aug 20, 2020 |
| Contact name |
Rulla M Tamimi |
| E-mail(s) |
[email protected]
|
| Phone |
617-525-0862
|
| Organization name |
Brigham and Women's Hospital
|
| Department |
Medicine
|
| Lab |
Channing Division of Network Medicine
|
| Street address |
181 Longwood Avenue
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL22920 |
| Series (1) |
| GSE115577 |
Tumor & Tumor-Adj Gene Expression in the Nurses' Health Study Cohorts |
|
| Relations |
| Reanalysis of |
GSM2458475 |
