|
| Status |
Public on Aug 02, 2018 |
| Title |
Arabidopsis_pifq ein3 eil1_R1 |
| Sample type |
SRA |
| |
|
| Source name |
pifq ein3 eil1_etiolated seedlings except roots
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
ecotype background: Col-0
genotype/variation: pifq ein3 eil1
tissue: etiolated seedlings except roots
|
| Treatment protocol |
No treatment
|
| Growth protocol |
The air-dried seeds were placed on MS medium after surface-sterilization and kept at 4℃ for fully imbibition. Three days later, the samples were exposed to light for 3-6 hours in order to stimulate germination and then maintained in darkness at 22℃ for another 3 days before sample collection.
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNAeasy Kit
standard Illumina mRNA-seq protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Clean_BN2-820_pifq ein3 eil1_R1
|
| Data processing |
BWA, v0.7.7, default parameter
degeR, v3.20.1, default parameter
Genome_build: TAIR10
Supplementary_files_format_and_content: Gene, reads per Gene(Total:40890624), length, coverage, rpkm
|
| |
|
| Submission date |
Jul 09, 2018 |
| Last update date |
Aug 02, 2018 |
| Contact name |
xing zhang |
| E-mail(s) |
[email protected]
|
| Organization name |
duke university
|
| Street address |
FFSC Bldg., 124 Science Drive
|
| City |
Durham |
| ZIP/Postal code |
27708 |
| Country |
USA |
| |
|
| Platform ID |
GPL13222 |
| Series (1) |
| GSE116802 |
Integrated regulation of apical hook development by transcriptional coupling of EIN3/EIL1 and PIFs in Arabidopsis |
|
| Relations |
| BioSample |
SAMN09632208 |
| SRA |
SRX4369931 |
