|
| Status |
Public on Nov 08, 2008 |
| Title |
FY 1N extracted ty DNA vs. genomic DNA |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
FY4 genomic DNA (Strain Name : FY haploid)
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
Strain Name : FY haploid
|
| Biomaterial provider |
Cheryl Christianson, Dunham Lab, Princeton University
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extracted molecule : Genomic DNA
Extraction method : Qiagen genomic prep http://genomics.princeton.edu/dunham/MDTSE.pdf
|
| Label |
Cy3
|
| Label protocol |
reference URL : http://genomics.princeton.edu/dunham/MDTSE.pdf
|
| |
|
| Channel 2 |
| Source name |
FY4 extracted ty DNA (Strain Name : FY haploid)
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
Strain Name : FY haploid
|
| Biomaterial provider |
Cheryl Christianson, Dunham Lab, Princeton University
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extracted molecule : Genomic DNA
Extraction method : Qiagen genomic prep followed by TSE http://genomics.princeton.edu/dunham/MDTSE.pdf
|
| Label |
Cy5
|
| Label protocol |
reference URL : http://genomics.princeton.edu/dunham/MDTSE.pdf
|
| |
|
| |
| Hybridization protocol |
reference URL : http://genomics.princeton.edu/dunham/MDTSE.pdf
|
| Scan protocol |
Pixel Size : 5
Scan Date : 2007-07-13
Scan Time : 10:41:56
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505B
Scanning software : ChipScan
Scanning software version : A.7.0.1
|
| Description |
Experiment design: DNA linked to Ty1/Ty2 sequences was extracted from evolved strains and ancestor strains, and compared to ancestral extracted or genomic DNA as indicated.
Complete protocols also available as supplementary files on the Series record
|
| Data processing |
Extraction Software : Agilent Feature Extractor
Extraction Software Version : 9.5.1.1
Datafile type : Agilent result file
|
| |
|
| Submission date |
Nov 03, 2008 |
| Last update date |
Nov 07, 2008 |
| Contact name |
Maitreya J. Dunham |
| E-mail(s) |
[email protected]
|
| Phone |
206-543-2338
|
| Organization name |
University of Washington
|
| Department |
Genome Sciences
|
| Lab |
Dunham Lab
|
| Street address |
Foege Building, S403B, Box 355065
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-5065 |
| Country |
USA |
| |
|
| Platform ID |
GPL4131 |
| Series (1) |
| GSE13435 |
The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast |
|
