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Sample GSM3786 Query DataSets for GSM3786
Status Public on Jan 29, 2003
Title RH_TH2_25A
Sample type RNA
 
Source name Thymic T cell precursors
Organism Mus musculus
Extracted molecule total RNA
 
Description Flow cytometrically purified T cell precursors of C57BL/6 mice. RNA was labeled by double round in vitro transcription-based RNA amplification. Images were analyzed with Affymetrix MAS 4.0. Files contain unnormalized AvgDiff values.
Surface marker phenotype: CD44-CD25+CD4-CD8-
Replicate number: 2 (Note: all samples with identical replicate numbers are derived from the same vial of cells).
 
Submission date Jan 28, 2003
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) [email protected]
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (1)
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF
Positive Number of positive probe pairs
Negative Number of negative probe pairs
Pairs Number of probe set specific probe pairs on the array
Pairs_Used Pairs used
Pairs_In_Ave Trimmed probe pair set
Pos_Fraction Positive/Pairs_Used
Log_Avg Log average
PM_Excess Number of probe pairs where PM/MM exceeds the ratio limit
MM_Excess Number of probe pairs where MM/PM exceeds 1/ratio limit
Pos/Neg Positive/Negative
VALUE Average Difference Intensity
ABS_CALL Whether a probe set is present, marginal, or absent

Data table
ID_REF Positive Negative Pairs Pairs_Used Pairs_In_Ave Pos_Fraction Log_Avg PM_Excess MM_Excess Pos/Neg VALUE ABS_CALL
IL2_at 4 4 19 19 17 0.21 0.15 0 0 1.0 -69 A
IL10_at 6 4 20 20 18 0.30 -0.09 0 0 1.5 46 A
GMCSF_at 3 4 20 20 19 0.15 0.30 0 0 0.8 32 A
TNFRII_at 3 2 20 20 18 0.15 0.59 0 0 1.5 146 A
MIP1-B_at 6 3 20 20 19 0.30 0.37 0 0 2.0 858 A
IL4_at 3 3 20 20 19 0.15 -0.00 0 0 1.0 63 A
IL12_P40_at 4 7 20 20 19 0.20 0.27 0 0 0.6 -135 A
TNFa_at 4 4 20 20 20 0.20 0.05 0 0 1.0 -88 A
TCRa_at 2 5 20 20 19 0.10 -0.96 0 0 0.4 -542 A
AFFX-BioB-5_at 5 5 20 20 18 0.25 0.60 0 0 1.0 143 A
AFFX-BioB-M_at 2 6 20 20 19 0.10 -1.06 0 0 0.3 -191 A
AFFX-BioB-3_at 5 3 20 20 19 0.25 0.54 1 0 1.7 121 A
AFFX-BioC-5_at 8 3 20 20 20 0.40 0.96 0 0 2.7 348 A
AFFX-BioC-3_at 4 1 20 20 20 0.20 0.28 0 0 4.0 27 A
AFFX-BioDn-5_at 2 1 20 20 20 0.10 0.07 0 0 2.0 27 A
AFFX-BioDn-3_at 11 0 20 20 19 0.55 1.84 0 0 Undef 2070 P
AFFX-CreX-5_at 16 0 20 20 19 0.80 3.68 0 0 Undef 3268 P
AFFX-CreX-3_at 19 0 20 20 20 0.95 4.95 0 0 Undef 7835 P
AFFX-BioB-5_st 4 5 20 20 19 0.20 0.20 0 0 0.8 250 A
AFFX-BioB-M_st 1 5 20 20 17 0.05 -0.73 0 0 0.2 -246 A

Total number of rows: 6584

Table truncated, full table size 328 Kbytes.




Supplementary data files not provided
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