June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32 July 08, 2016: annotation table updated with netaffx build 35
Identification of genes expressed with temporal-spatial restriction to developing cerebellar neuron precursors by a functional genomic approach perspective of human cancers.
Data table header descriptions
ID
Affymetrix Probe Set ID
GB_ACC
GenBank Accession Number
SPOT_ID
identifies controls
Species Scientific Name
The genus and species of the organism represented by the probe set.
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source
The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene Database UID
RefSeq Transcript ID
References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006366 // transcription from RNA polymerase II promoter // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // not recorded /// 0043922 // negative regulation by host of viral transcription // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0070935 // 3'-UTR-mediated mRNA stabilization // not recorded
0005634 // nucleus // not recorded
0000166 // nucleotide binding // inferred from electronic annotation /// 0001205 // RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // inferred from direct assay /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003690 // double-stranded DNA binding // not recorded /// 0003723 // RNA binding // not recorded /// 0003730 // mRNA 3'-UTR binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // not recorded /// 0044822 // poly(A) RNA binding // not recorded
0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0051028 // mRNA transport // inferred from electronic annotation
0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annotation
0005488 // binding // inferred from electronic annotation
0000422 // mitochondrion degradation // /// 0001889 // liver development // inferred from mutant phenotype /// 0006497 // protein lipidation // not recorded /// 0006501 // C-terminal protein lipidation // /// 0006520 // cellular amino acid metabolic process // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006914 // autophagy // inferred from mutant phenotype /// 0006995 // cellular response to nitrogen starvation // /// 0006996 // organelle organization // inferred from mutant phenotype /// 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0007628 // adult walking behavior // inferred from mutant phenotype /// 0009267 // cellular response to starvation // inferred from sequence or structural similarity /// 0009791 // post-embryonic development // inferred from mutant phenotype /// 0010508 // positive regulation of autophagy // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016236 // macroautophagy // /// 0016239 // positive regulation of macroautophagy // not recorded /// 0016567 // protein ubiquitination // inferred from direct assay /// 0021680 // cerebellar Purkinje cell layer development // inferred from mutant phenotype /// 0021860 // pyramidal neuron development // inferred from mutant phenotype /// 0021955 // central nervous system neuron axonogenesis // inferred from mutant phenotype /// 0021987 // cerebral cortex development // inferred from mutant phenotype /// 0030163 // protein catabolic process // inferred from mutant phenotype /// 0031175 // neuron projection development // inferred from mutant phenotype /// 0031396 // regulation of protein ubiquitination // inferred from mutant phenotype /// 0031401 // positive regulation of protein modification process // inferred from direct assay /// 0031401 // positive regulation of protein modification process // not recorded /// 0032446 // protein modification by small protein conjugation // inferred from mutant phenotype /// 0034727 // piecemeal microautophagy of nucleus // /// 0039689 // negative stranded viral RNA replication // inferred from mutant phenotype /// 0042594 // response to starvation // inferred from mutant phenotype /// 0043065 // positive regulation of apoptotic process // inferred from sequence or structural similarity /// 0043066 // negative regulation of apoptotic process // inferred from mutant phenotype /// 0044805 // late nucleophagy // /// 0045732 // positive regulation of protein catabolic process // inferred from sequence or structural similarity /// 0050877 // neurological system process // inferred from mutant phenotype /// 0055013 // cardiac muscle cell development // inferred from mutant phenotype /// 0061024 // membrane organization // inferred from mutant phenotype /// 0071455 // cellular response to hyperoxia // inferred from sequence or structural similarity
0000407 // pre-autophagosomal structure // inferred from electronic annotation /// 0000407 // pre-autophagosomal structure // /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // /// 0005930 // axoneme // inferred from direct assay
0003824 // catalytic activity // inferred from electronic annotation /// 0004839 // ubiquitin activating enzyme activity // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0019778 // Atg12 activating enzyme activity // inferred from mutant phenotype /// 0019779 // Atg8 activating enzyme // /// 0042803 // protein homodimerization activity // not recorded
0002337 // B-1a B cell differentiation // inferred from mutant phenotype /// 0006935 // chemotaxis // inferred from electronic annotation
0005615 // extracellular space // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation
0005125 // cytokine activity // inferred from electronic annotation
0003333 // amino acid transmembrane transport // not recorded /// 0006810 // transport // inferred from electronic annotation /// 0009914 // hormone transport // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070327 // thyroid hormone transport // not recorded
0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation
0015293 // symporter activity // inferred from electronic annotation /// 0015349 // thyroid hormone transmembrane transporter activity // not recorded
0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016311 // dephosphorylation // inferred from direct assay /// 0035335 // peptidyl-tyrosine dephosphorylation // inferred from direct assay
0000287 // magnesium ion binding // inferred from direct assay /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine phosphatase activity // inferred from direct assay /// 0008967 // phosphoglycolate phosphatase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0098519 // nucleotide phosphatase activity, acting on free nucleotides // inferred from direct assay
0016567 // protein ubiquitination // inferred from electronic annotation /// 0042787 // protein ubiquitination involved in ubiquitin-dependent protein catabolic process // not recorded
0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation
0004842 // ubiquitin-protein transferase activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0008766 // UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0018169 // ribosomal S6-glutamic acid ligase activity // inferred from electronic annotation /// 0043773 // coenzyme F420-0 gamma-glutamyl ligase activity // inferred from electronic annotation /// 0043774 // coenzyme F420-2 alpha-glutamyl ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070735 // protein-glycine ligase activity // inferred from electronic annotation /// 0070736 // protein-glycine ligase activity, initiating // inferred from electronic annotation /// 0070737 // protein-glycine ligase activity, elongating // inferred from electronic annotation /// 0070738 // tubulin-glycine ligase activity // inferred from electronic annotation /// 0070739 // protein-glutamic acid ligase activity // inferred from electronic annotation /// 0070740 // tubulin-glutamic acid ligase activity // inferred from electronic annotation
0007155 // cell adhesion // inferred from electronic annotation
0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005595 // collagen type XII trimer // not recorded /// 0005615 // extracellular space // not recorded /// 0031012 // extracellular matrix // not recorded /// 0070062 // extracellular vesicular exosome // not recorded
0006810 // transport // inferred from electronic annotation /// 0006869 // lipid transport // inferred from electronic annotation /// 0009749 // response to glucose // inferred from electronic annotation /// 0033344 // cholesterol efflux // inferred from mutant phenotype /// 0033344 // cholesterol efflux // not recorded /// 0034375 // high-density lipoprotein particle remodeling // inferred from mutant phenotype /// 0034375 // high-density lipoprotein particle remodeling // not recorded /// 0034380 // high-density lipoprotein particle assembly // inferred from mutant phenotype /// 0034384 // high-density lipoprotein particle clearance // inferred from mutant phenotype /// 0034445 // negative regulation of plasma lipoprotein particle oxidation // inferred from direct assay /// 0034445 // negative regulation of plasma lipoprotein particle oxidation // not recorded /// 0042157 // lipoprotein metabolic process // inferred from mutant phenotype /// 0043691 // reverse cholesterol transport // inferred from mutant phenotype
0005576 // extracellular region // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0034361 // very-low-density lipoprotein particle // not recorded /// 0034362 // low-density lipoprotein particle // not recorded /// 0034364 // high-density lipoprotein particle // inferred from direct assay /// 0034364 // high-density lipoprotein particle // not recorded /// 0034365 // discoidal high-density lipoprotein particle // inferred from direct assay /// 0034365 // discoidal high-density lipoprotein particle // not recorded /// 0034366 // spherical high-density lipoprotein particle // not recorded
0005319 // lipid transporter activity // not recorded /// 0005543 // phospholipid binding // not recorded /// 0005543 // phospholipid binding // inferred from sequence or structural similarity /// 0016209 // antioxidant activity // inferred from direct assay /// 0016209 // antioxidant activity // not recorded
0006508 // proteolysis // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0051603 // proteolysis involved in cellular protein catabolic process // inferred from electronic annotation
0000502 // proteasome complex // inferred from electronic annotation /// 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // traceable author statement /// 0005839 // proteasome core complex // inferred from direct assay /// 0019773 // proteasome core complex, alpha-subunit complex // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // not recorded
0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation
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