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GEO accession:
Sample GSM391372
Query DataSets for GSM391372
Status
Public on Apr 14, 2009
Title
MEF Med23-/- (KO) cells serum starved 16 h Set 2
Sample type
RNA
Source name
Mouse Med23 -/- embryonic fibroblasts (E11) passaged through crisis, cultured
Organism
Mus musculus
Characteristics
strain: Med23-/- (KO)
Treatment protocol
Starved 16 h in 0.5% FBS DMEM and then total RNA harvested (see below). Second replicate.
Extracted molecule
total RNA
Extraction protocol
Trizol and Qiagen RNeasy column purification.
Label
biotin
Label protocol
UCLA Microarray Core
Hybridization protocol
UCLA Microarray Core
Scan protocol
UCLA Microarray Core
Description
N/A
Data processing
MAS5
Submission date
Apr 10, 2009
Last update date
Apr 16, 2009
Contact name
Michael Andrew Balamotis
E-mail(s)
[email protected]
Organization name
Lawrence Berkeley National Lab
Department
Life Sciences
Lab
Kohwi-Shigematsu
Street address
1 Cycotron Rd. Bld. 84
City
Berkeley
State/province
CA
ZIP/Postal code
94720
Country
USA
Platform ID
GPL339
Series (1)
GSE15638
MEF wt versus Med23-/- KO after 20% Serum Stimulation
Data table header descriptions
ID_REF
VALUE
signal intensity
ABS_CALL
Present or absent call
DETECTION P-VALUE
Relevance
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
592.701
P
0.00844047
AFFX-BioB-M_at
1242.17
P
0.000195116
AFFX-BioB-3_at
510.394
P
0.00401721
AFFX-BioC-5_at
1885.46
P
0.000146581
AFFX-BioC-3_at
1361
P
5.16732e-05
AFFX-BioDn-5_at
1784.84
P
0.000169227
AFFX-BioDn-3_at
8927.32
P
0.000296708
AFFX-CreX-5_at
16316.7
P
4.42873e-05
AFFX-CreX-3_at
30401.9
P
4.42873e-05
AFFX-DapX-5_at
108.86
A
0.131361
AFFX-DapX-M_at
118.759
A
0.147939
AFFX-DapX-3_at
24.1064
A
0.876428
AFFX-LysX-5_at
60.7706
A
0.382599
AFFX-LysX-M_at
14.3717
A
0.883887
AFFX-LysX-3_at
109.421
A
0.165861
AFFX-PheX-5_at
10.2278
A
0.883887
AFFX-PheX-M_at
6.48874
A
0.963431
AFFX-PheX-3_at
51.7731
A
0.5
AFFX-ThrX-5_at
55.4334
A
0.631562
AFFX-ThrX-M_at
24.2171
A
0.631562
Total number of rows:
22690
Table truncated, full table size
706 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM391372.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
GSM391372.CHP.gz
6.1 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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