GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM391374
Query DataSets for GSM391374
Status
Public on Apr 14, 2009
Title
MEF wt cells 20% serum stimulated Set 2
Sample type
RNA
Source name
Mouse embryonic fibroblasts (E11) passaged through crisis, cultured
Organism
Mus musculus
Characteristics
strain: WT
Treatment protocol
Starved 16 h in 0.5% FBS DMEM and then stimulated with 20% FBS for 30 minutes, then total RNA harvested (see below). Second replicate.
Extracted molecule
total RNA
Extraction protocol
Trizol and Qiagen column purification
Label
biotin
Label protocol
UCLA Microarray Core
Hybridization protocol
UCLA Microarray Core
Scan protocol
UCLA Microarray Core
Description
N/A
Data processing
MAS5
Submission date
Apr 10, 2009
Last update date
Apr 16, 2009
Contact name
Michael Andrew Balamotis
E-mail(s)
[email protected]
Organization name
Lawrence Berkeley National Lab
Department
Life Sciences
Lab
Kohwi-Shigematsu
Street address
1 Cycotron Rd. Bld. 84
City
Berkeley
State/province
CA
ZIP/Postal code
94720
Country
USA
Platform ID
GPL339
Series (1)
GSE15638
MEF wt versus Med23-/- KO after 20% Serum Stimulation
Data table header descriptions
ID_REF
VALUE
signal intensity
ABS_CALL
Present or absent call
DETECTION P-VALUE
Relevance
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
489.08
P
0.00618711
AFFX-BioB-M_at
804.321
P
0.000509415
AFFX-BioB-3_at
221.097
P
0.0309764
AFFX-BioC-5_at
1204.83
P
0.000296708
AFFX-BioC-3_at
779.201
P
7.00668e-05
AFFX-BioDn-5_at
1142.74
P
0.000224668
AFFX-BioDn-3_at
7379.37
P
0.000296708
AFFX-CreX-5_at
11682.7
P
4.42873e-05
AFFX-CreX-3_at
19933
P
4.42873e-05
AFFX-DapX-5_at
41.3679
A
0.300606
AFFX-DapX-M_at
72.8653
A
0.440646
AFFX-DapX-3_at
16.3059
A
0.973899
AFFX-LysX-5_at
30.3623
A
0.455413
AFFX-LysX-M_at
14.5955
A
0.860518
AFFX-LysX-3_at
26.7434
A
0.470241
AFFX-PheX-5_at
7.66403
A
0.981719
AFFX-PheX-M_at
7.02983
A
0.957038
AFFX-PheX-3_at
175.171
A
0.287743
AFFX-ThrX-5_at
35.2979
A
0.58862
AFFX-ThrX-M_at
85.8809
A
0.340661
Total number of rows:
22690
Table truncated, full table size
706 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM391374.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
GSM391374.CHP.gz
6.2 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
