|
| Status |
Public on Aug 03, 2020 |
| Title |
85 Aged C |
| Sample type |
SRA |
| |
|
| Source name |
Aged C_peripheral blood HSC
|
| Organism |
Homo sapiens |
| Characteristics |
subject id: Aged C
Sex: Female
race: Caucasian
age: 61
tissue: peripheral blood
cell type: Hematopoietic Stem Cells (HSCs)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Fluidigm C1 single cell platform
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Reads aligned to GrCh38 assembly of the human genome using STAR using default parameters
Partek Genomics Suite was run to align reads to perform differenital expression analyses
Genome_build: GrCh38
Supplementary_files_format_and_content: Abundance measurements
|
| |
|
| Submission date |
Oct 07, 2019 |
| Last update date |
Aug 03, 2020 |
| Contact name |
Michelle L Ratliff |
| E-mail(s) |
[email protected]
|
| Phone |
2527443127
|
| Organization name |
East Carolina University
|
| Department |
Microbiology and Immunology
|
| Street address |
600 Moye Blvd, 132 Biotechnology Building
|
| City |
Greenville |
| State/province |
NC |
| ZIP/Postal code |
27834 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE138544 |
ARID3a expression in human hematopoietic stem cells is associated with distinct gene patterns in aged individuals |
|
| Relations |
| BioSample |
SAMN12991332 |
| SRA |
SRX6962228 |
