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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 31, 2022 |
| Title |
WT 100 nM Rep 1 |
| Sample type |
SRA |
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| Source name |
whole root tissue
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| Organism |
Oryza sativa Japonica Group |
| Characteristics |
treatment: 100 nM benzyl adenine
genotype: Kitaake
replicate: 1
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| Extracted molecule |
polyA RNA |
| Extraction protocol |
polyA-enriched, cDNA generated with random primers, PCR amplified
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
alignment: star, overhang of 49 bases, SA index N bases parameter of 13
quantification: salmon, flags used: --gcBias, --seqBias
data analysis: DESeq2
Genome_build: IRGSP 1.0
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| Submission date |
Dec 03, 2019 |
| Last update date |
Dec 31, 2022 |
| Contact name |
Charles Hodgens |
| E-mail(s) |
[email protected]
|
| Phone |
9199286037
|
| Organization name |
UNC Chapel Hill
|
| Department |
GMB
|
| Lab |
Kieber Lab
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| Street address |
250 Bell Tower Drive
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| City |
Chapel Hill |
| State/province |
North Carolina (NC) |
| ZIP/Postal code |
27599 |
| Country |
USA |
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| Platform ID |
GPL27860 |
| Series (1) |
| GSE141408 |
The rice pseudo phosphotransfer proteins are negative regulators of endogenous cytokinin signaling and affect multiple aspects of growth and development. |
|
| Relations |
| SRA |
SRX7132360 |
| BioSample |
SAMN13270042 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4202419_2.wt100nMR1.sf.txt.gz |
708.0 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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