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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 03, 2019 |
| Title |
Illumina NovaSeq 6000 (Oryza sativa Japonica Group) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Oryza sativa Japonica Group |
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| Submission date |
Dec 03, 2019 |
| Last update date |
Dec 03, 2019 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (450)
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GSM4202416, GSM4202417, GSM4202418, GSM4202419, GSM4202420, GSM4202421
GSM4202422, GSM4202423, GSM4202424, GSM4202425, GSM4202426, GSM4202427, GSM4202428, GSM4202429, GSM4202430, GSM4202431, GSM4202432, GSM4202433, GSM4443349, GSM4443350, GSM4443351, GSM4443352, GSM4443353, GSM4443354, GSM4443355, GSM4443356, GSM4443357, GSM4443358, GSM4443359, GSM4443360, GSM4443361, GSM4443362, GSM4443363, GSM4443364, GSM4443365, GSM4443366, GSM4443367, GSM4443368, GSM4443369, GSM4443370, GSM4443371, GSM4443372, GSM4575902, GSM4575903, GSM4575904, GSM4575905, GSM4575906, GSM4575907, GSM4575908, GSM4575909, GSM5130111, GSM5130112, GSM5130113, GSM5130114, GSM5130115, GSM5130116, GSM5130117, GSM5130118, GSM5130119, GSM5130120, GSM5130121, GSM5130122, GSM5130123, GSM5130124, GSM5130125, GSM5130126, GSM5130127, GSM5130128, GSM5130129, GSM5130130, GSM5130131, GSM5130132, GSM5130133, GSM5130134, GSM5130135, GSM5130136, GSM5130137, GSM5130138, GSM5130139, GSM5130140, GSM5130141, GSM5130142, GSM5130143, GSM5130144, GSM5130145, GSM5130146, GSM5130147, GSM5130148, GSM5130149, GSM5130150, GSM5229656, GSM5229657, GSM5229658, GSM5229659, GSM5229660, GSM5229661, GSM5229662, GSM5229663, GSM5229664, GSM5229665, GSM5229666, GSM5229667, GSM5396009, GSM5396010, GSM5396011, GSM5396012, GSM5396013, GSM5396014, GSM5396015, GSM5396016, GSM5597391, GSM5597392, GSM5597393, GSM5597394, GSM5597395, GSM5605641, GSM5605642, GSM5605643, GSM5605644, GSM5605645, GSM5701570, GSM5701571, GSM5701572, GSM5701573, GSM5701574, GSM5701575, GSM5701576, GSM5701577, GSM5706335, GSM5706336, GSM5706337, GSM5706338, GSM5706339, GSM5706340, GSM5706341, GSM5706342, GSM5706343, GSM5706344, GSM5706345, GSM5706346, GSM5706347, GSM5706348, GSM5706349, GSM5706350, GSM5706351, GSM5706352, GSM5896540, GSM5896541, GSM5896544, GSM5896545, GSM5975577, GSM5975578, GSM5975579, GSM5975580, GSM5975581, GSM5975582, GSM5975583, GSM5975584, GSM5975585, GSM5975586, GSM5975587, GSM5975588, GSM5975589, GSM5975590, GSM5975591, GSM5975592, GSM5975593, GSM5975594, GSM6068495, GSM6068496, GSM6068497, GSM6068504, GSM6068505, GSM6068506, GSM6108277, GSM6108278, GSM6346341, GSM6346342, GSM6346343, GSM6346344, GSM6346345, GSM6346346, GSM6346347, GSM6346348, GSM6346349, GSM6346350, GSM6346351, GSM6427759, GSM6427760, GSM6427761, GSM6427762, GSM6427763, GSM6427764, GSM6427765, GSM6427766, GSM6744417, GSM6744418, GSM6744423, GSM6744424, GSM6744425, GSM6744426, GSM6744429, GSM6744430, GSM7084098, GSM7084099, GSM7084100, GSM7084101, GSM7084102, GSM7084103, GSM7084104, GSM7084105, GSM7105856, GSM7105857, GSM7105858, GSM7105859, GSM7105860, GSM7105861, GSM7105862, GSM7105863, GSM7142446, GSM7142447, GSM7142448, GSM7142449, GSM7142450, GSM7142451, GSM7316650, GSM7316651, GSM7316652, GSM7316653, GSM7316654, GSM7316655, GSM7316656, GSM7316657, GSM7316658, GSM7316659, GSM7316660, GSM7316661, GSM7474239, GSM7474241, GSM7474242, GSM7474243, GSM7474244, GSM7474245, GSM7474246, GSM7474247, GSM7474248, GSM7474249, GSM7474250, GSM7474251, GSM7474252, GSM7474253, GSM7474254, GSM7474255, GSM7474256, GSM7474257, GSM7474258, GSM7474259, GSM7474260, GSM7507557, GSM7507558, GSM7507559, GSM7507560, GSM7507561, GSM7507562, GSM7507563, GSM7507564, GSM7507565, GSM7507566, GSM7507567, GSM7507568, GSM7507569, GSM7507570, GSM7507571, GSM7507572, GSM7507573, GSM7507574, GSM7507575, GSM7507576, GSM7507577, GSM7507578, GSM7507579, GSM7507580, GSM7507581, GSM7507582, GSM7507583, GSM7507584, GSM7507585, GSM7507586, GSM7507587, GSM7507588, GSM7507589, GSM7507590, GSM7507591, GSM7507592, GSM7507593, GSM7507594, GSM7507595, GSM7507596, GSM7507597, GSM7507598, GSM7507599, GSM7507600, GSM7507601, GSM7507602, GSM7507603, GSM7507604, GSM7507605, GSM7507606, GSM7507607, GSM7507608, GSM7507609, GSM7507610, GSM7507611, GSM7507612, GSM7794752, GSM7794753, GSM7794754, GSM7794755, GSM7794756, GSM7794757, GSM7794758, GSM7794759, GSM7794760, GSM7794761, GSM7794762, GSM7794763, GSM7794764, GSM7794765, GSM7794766, GSM7794767, GSM7794768, GSM7794769, GSM7794770, GSM7794771, GSM7794772, GSM7794773, GSM7794774, GSM7794775, GSM7794776, GSM7794777, GSM7794778, GSM7794779, GSM7794780, GSM7794781, GSM7794782, GSM7794783, GSM7968963, GSM7968964, GSM7968965, GSM8189821, GSM8189822, GSM8189823, GSM8189824, GSM8189825, GSM8189826, GSM8189827, GSM8189828, GSM8189829, GSM8189830, GSM8189831, GSM8189832, GSM8189833, GSM8189834, GSM8189835, GSM8189836, GSM8189837, GSM8189838, GSM8189839, GSM8189840, GSM8189841, GSM8189842, GSM8189843, GSM8189844, GSM8189845, GSM8189846, GSM8189847, GSM8189848, GSM8189849, GSM8189850, GSM8189851, GSM8189852, GSM8189854, GSM8189856, GSM8189857, GSM8189858, GSM8189859, GSM8189860, GSM8189861, GSM8189862, GSM8189863, GSM8189864, GSM8189865, GSM8189866, GSM8189867, GSM8189868, GSM8189869, GSM8189870, GSM8189871, GSM8189872, GSM8189873, GSM8189874, GSM8189875, GSM8189877, GSM8189878, GSM8189879, GSM8189880, GSM8189881, GSM8189883, GSM8189884, GSM8189885, GSM8189886, GSM8189887, GSM8189888, GSM8189889, GSM8189890, GSM8189891, GSM8189892, GSM8189893, GSM8189894, GSM8189895, GSM8394878, GSM8394879, GSM8394880, GSM8394881, GSM8394882, GSM8394883, GSM8394884, GSM8394885, GSM8394886, GSM8394887, GSM8394888, GSM8394889, GSM8394890, GSM8394891, GSM8394892, GSM8394893, GSM8394894, GSM8394895, GSM8394896, GSM8394897, GSM8394898, GSM8394899, GSM8394900, GSM8394901, GSM8394902, GSM8394903, GSM8394904, GSM8394905, GSM8394906, GSM8394907
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| Series (33)
|
| GSE141408 |
The rice pseudo phosphotransfer proteins are negative regulators of endogenous cytokinin signaling and affect multiple aspects of growth and development. |
| GSE147692 |
Next Generation Sequencing Facilitates Quantitative Analysis of bHLH6 OV, spx4, and wild-type Transcriptomes |
| GSE151351 |
Genome-wide transcriptome analysis between WT and OsGRP3 overexpressing (or knock-down) rice |
| GSE168162 |
A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage |
| GSE171646 |
Nitrogen fertilizer reduces salicylic acid-mediated immunity by activating gibberellin signaling in rice |
| GSE178682 |
Genome-wide transcriptome analysis of GOS2:NF-YA5-GR transgenic rice after DEX treatment |
| GSE184783 |
Genome-wide characterization of i-motifs and their potential roles in the stability and evolution of transposable elements in rice |
| GSE185068 |
A rice single cell transcriptomic atlas defines the developmental trajectories of rice floret and inflorescence meristems |
| GSE189428 |
Epigenetic characterization of carbon dots functions in rice |
| GSE189719 |
The interfering transcription activator-like effector DR16 and OsSOG1 attenuates OsTOPBP1C-activated rice bacterial blight resistance |
| GSE196604 |
Genomic variations combined with epigenetic modifications rewire open chromatin in rice |
| GSE197245 |
Probing in vivo RNA structure with optimized DMS-MaPseq in rice |
| GSE199590 |
G-protein mutants RNA-seq analysis of salt resonse in Arabidopsis and Marchantia |
| GSE201607 |
Machine learning accelerates the dissection of mitostasis as a cross-species central biological hub for leaf senescence |
| GSE208431 |
Single-nucleus sequencing deciphers lineage trajectories in rice pistils [bulk RNA-seq] |
| GSE208432 |
Single-nucleus sequencing deciphers lineage trajectories in rice pistils [snRNA-seq] |
| GSE208433 |
Single-nucleus sequencing deciphers developmental trajectories in rice pistils |
| GSE210296 |
High-temperature adaptation of an OsNRT2.3 allele is thermoregulated by small RNAs |
| GSE218416 |
Establish the male meiocyte-specific epigenomic landscape |
| GSE225483 |
BSseq for WT and osino80 |
| GSE225484 |
ChIP-seq for OsINO80 location using YFP antibody, and ChIP-seq for WT and osino80 using H3, H2A, H2A.Z, H2Aub, H3K9me2, H3K4me2, H3K4me3, H3K27me3, and H3K36me3 antibodies |
| GSE225485 |
RNAseq for WT and osino80 |
| GSE226812 |
Chromatin mechanism of DELLA-mediated gene repression and Gibberellin-induced gene activation in rice |
| GSE227706 |
The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice |
| GSE228904 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and OsWRKY65-overexpression transgenic Transcriptomes |
| GSE232160 |
SCR106 splicing factor modulates abiotic stress responses by maintaining the RNA splicing in rice |
| GSE234750 |
Differential impacts of DNA methylation on pH dependent i-motifs formation in rice [Bisulfite-seq] |
| GSE234751 |
Differential impacts of DNA methylation on pH dependent i-motifs formation in rice [ChIP-seq] |
| GSE234752 |
Differential impacts of DNA methylation on pH dependent i-motifs formation in rice |
| GSE235680 |
Function of CHG methylation dynamics in rice male gametogenesis |
| GSE243722 |
SAC-seq for transcriptome-wide quantitative sequencing of mRNA m6A at base resolution |
| GSE263341 |
ChIP-seq, RNA-seq and BS-seq for WT and osino80 |
| GSE272164 |
Alternative polyadenylation contributes to the Resistance of the Jiangxi hybrid rice to blast rice using transcriptomics and metabolomics |
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| Supplementary data files not provided |
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