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Sample GSM446296 Query DataSets for GSM446296
Status Public on Aug 29, 2009
Title M24F_2
Sample type RNA
 
Source name 20 pooled midguts/fatbodies
Organism Dendroctonus ponderosae
Characteristics tissue: midguts/fatbodies
gender: male
status: fed alone for 24 h, then with females 24 h
Growth protocol Beetles were collected from Pinus ponderosae bolts from Little Valley, Nevada
Extracted molecule total RNA
Extraction protocol Qiagen plant midiprep followed by RNase-free DNase digestion
Label Cy3
Label protocol Labeling was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
 
Hybridization protocol Hybridization was performed by NimbleGen Systems Inc., Madison, WI, USA following their standard operating protocol. See www.nimblegen.com.
Scan protocol Scanning was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
Description 11513302_532_pair.txt
Data processing Data processing was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
 
Submission date Aug 28, 2009
Last update date Sep 10, 2009
Contact name Claus Tittiger
E-mail(s) [email protected]
Phone 775-784-6480
Fax 775-784-1419
Organization name University of Nevada, Reno
Department Biochemistry and Molecular Biology
Lab HMS 150
Street address Mail Stop 330
City Reno
State/province NV
ZIP/Postal code 89557
Country USA
 
Platform ID GPL9118
Series (1)
GSE17858 Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fatbodies

Data table header descriptions
ID_REF
VALUE RMA normalized signal (3 blocks per feature)

Data table
ID_REF VALUE
Contig10_BLOCK1 7569.2774
Contig10_BLOCK2 7851.1972
Contig10_BLOCK3 7361.5153
Contig100_BLOCK1 244.3393
Contig100_BLOCK2 423.7322
Contig100_BLOCK3 293.6926
Contig1000_BLOCK1 3529.7911
Contig1000_BLOCK2 3372.3327
Contig1000_BLOCK3 3835.3451
Contig1001_BLOCK1 7657.2316
Contig1001_BLOCK2 7159.0974
Contig1001_BLOCK3 6763.3251
Contig1002_BLOCK1 548.0312
Contig1002_BLOCK2 545.357
Contig1002_BLOCK3 542.5902
Contig1003_BLOCK1 21795.874
Contig1003_BLOCK2 24928.0388
Contig1003_BLOCK3 22260.7839
Contig1004_BLOCK1 12284.7336
Contig1004_BLOCK2 11587.135

Total number of rows: 11214

Table truncated, full table size 291 Kbytes.




Supplementary file Size Download File type/resource
GSM446296.txt.gz 1.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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