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Platform GPL9118 Query DataSets for GPL9118
Status Public on Aug 29, 2009
Title Dendroctonus ponderosae midgut array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Dendroctonus ponderosae
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description NimbleGen design name 080407_D_ponderosae_expr, NimbleGen design ID 7440. 4x expression for Dendroctonus ponderosae (4034 initial contig seqs + 4 controls; 3738 exemplars for 3745 seqs; two long controls re-selected to distribute probes along whole length), 3 copies of each probe on array pairs (PM/MM) per gene. Each probe is replicated 3 times. The design includes random GC and other control probes.
 
Submission date Aug 28, 2009
Last update date Aug 29, 2009
Contact name Claus Tittiger
E-mail(s) [email protected]
Phone 775-784-6480
Fax 775-784-1419
Organization name University of Nevada, Reno
Department Biochemistry and Molecular Biology
Lab HMS 150
Street address Mail Stop 330
City Reno
State/province NV
ZIP/Postal code 89557
Country USA
 
Samples (44) GSM446276, GSM446277, GSM446278, GSM446279, GSM446280, GSM446281 
Series (1)
GSE17858 Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fatbodies

Data table header descriptions
ID
GB_ACC GenBank Accession number
SPOT_ID

Data table
ID GB_ACC SPOT_ID
Contig10_BLOCK1 EZ114966
Contig10_BLOCK2 EZ114966
Contig10_BLOCK3 EZ114966
Contig100_BLOCK1 EZ115056
Contig100_BLOCK2 EZ115056
Contig100_BLOCK3 EZ115056
Contig1000_BLOCK1 EZ115954
Contig1000_BLOCK2 EZ115954
Contig1000_BLOCK3 EZ115954
Contig1001_BLOCK1 EZ115955
Contig1001_BLOCK2 EZ115955
Contig1001_BLOCK3 EZ115955
Contig1002_BLOCK1 EZ115956
Contig1002_BLOCK2 EZ115956
Contig1002_BLOCK3 EZ115956
Contig1003_BLOCK1 EZ115957
Contig1003_BLOCK2 EZ115957
Contig1003_BLOCK3 EZ115957
Contig1004_BLOCK1 EZ115958
Contig1004_BLOCK2 EZ115958

Total number of rows: 11214

Table truncated, full table size 296 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9118_080407_D_ponderosae_expr.ndf.gz 4.2 Mb (ftp)(http) NDF
GPL9118_080407_D_ponderosae_expr.ngd.gz 20.3 Kb (ftp)(http) NGD

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