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Sample GSM446316 Query DataSets for GSM446316
Status Public on Aug 29, 2009
Title F48U_2
Sample type RNA
 
Source name 20 pooled midguts/fatbodies
Organism Dendroctonus ponderosae
Characteristics tissue: midguts/fatbodies
gender: female
status: unfed (starved) 48 h
Growth protocol Beetles were collected from Pinus ponderosae bolts from Little Valley, Nevada
Extracted molecule total RNA
Extraction protocol Qiagen plant midiprep followed by RNase-free DNase digestion
Label Cy3
Label protocol Labeling was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
 
Hybridization protocol Hybridization was performed by NimbleGen Systems Inc., Madison, WI, USA following their standard operating protocol. See www.nimblegen.com.
Scan protocol Scanning was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
Description 12144702_532_pair.txt
Data processing Data processing was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.
 
Submission date Aug 28, 2009
Last update date Sep 10, 2009
Contact name Claus Tittiger
E-mail(s) [email protected]
Phone 775-784-6480
Fax 775-784-1419
Organization name University of Nevada, Reno
Department Biochemistry and Molecular Biology
Lab HMS 150
Street address Mail Stop 330
City Reno
State/province NV
ZIP/Postal code 89557
Country USA
 
Platform ID GPL9118
Series (1)
GSE17858 Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fatbodies

Data table header descriptions
ID_REF
VALUE RMA normalized signal (3 blocks per feature)

Data table
ID_REF VALUE
Contig10_BLOCK1 4752.4344
Contig10_BLOCK2 4277.9589
Contig10_BLOCK3 4709.7869
Contig100_BLOCK1 375.4203
Contig100_BLOCK2 356.2751
Contig100_BLOCK3 402.0383
Contig1000_BLOCK1 2187.7507
Contig1000_BLOCK2 2142.3244
Contig1000_BLOCK3 2459.8221
Contig1001_BLOCK1 4216.7781
Contig1001_BLOCK2 4108.8741
Contig1001_BLOCK3 3958.1782
Contig1002_BLOCK1 712.8793
Contig1002_BLOCK2 744.6889
Contig1002_BLOCK3 775.8008
Contig1003_BLOCK1 17023.5155
Contig1003_BLOCK2 15875.9569
Contig1003_BLOCK3 16083.969
Contig1004_BLOCK1 8183.2929
Contig1004_BLOCK2 8445.909

Total number of rows: 11214

Table truncated, full table size 291 Kbytes.




Supplementary file Size Download File type/resource
GSM446316.txt.gz 1.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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