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Sample GSM451762 Query DataSets for GSM451762
Status Public on Sep 12, 2009
Title BXD18 Myeloid batch2
Sample type RNA
 
Source name Myeloid
Organism Mus musculus
Characteristics mouse id: 18
bxd strain: 18
cell type: Gr1+
array batch: 2
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the RNeasy Mini kit (Qiagen) in accordance with the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA was prepared using the Illumina TotalPrep RNA Amplification Kit (Ambion) according to the manufacturer’s specifications starting with 100 ng total RNA
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description none
Data processing Quantile normalization was applied on log2 transformed data.
 
Submission date Sep 10, 2009
Last update date Sep 11, 2009
Contact name Bruno Tesson
Organization name University of Groningen
Department Groningen Bioinformatics Center
Lab GBiC
Street address Kerklaan 30
City Haren
ZIP/Postal code 9750NN
Country Netherlands
 
Platform ID GPL6238
Series (1)
GSE18067 Expression profiles of four hematopoietic cell types isolated from the bone marrow of BXD recombinant inbred mice.

Data table header descriptions
ID_REF
VALUE Normalized intensity
Detection Pval

Data table
ID_REF VALUE Detection Pval
10181072_239_rc-S 6.600536079 4.80E-01
10181072_290_rc-S 6.729805983 2.40E-01
10181072_290-S 6.781051526 1.83E-01
10181072_311_rc-S 7.180741494 1.87E-02
10181072_311-S 6.527311164 6.31E-01
10181072_418_rc-S 6.617397527 4.47E-01
10181072_418-S 6.339629891 9.39E-01
10181072_486_rc-S 6.392369102 8.81E-01
10181072_486-S 6.525636699 6.36E-01
17974913_3385_rc-S 6.593491298 4.94E-01
17974913_3385-S 6.615151691 4.52E-01
17974913_3999_rc-S 6.234532317 9.88E-01
17974913_4071_rc-S 6.229089306 9.89E-01
17974913_4071-S 6.514412284 6.54E-01
17974913_4426_rc-S 6.439502966 8.16E-01
17974913_4426-S 6.439388323 8.16E-01
17974913_4962_rc-S 6.419113946 8.49E-01
17974913_4962-S 6.390461082 8.85E-01
18S_rRNA_X00686_301-S 15.03382389 0.00E+00
18S_rRNA_X00686_523-S 12.80966466 0.00E+00

Total number of rows: 46628

Table truncated, full table size 1887 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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