GEO help: Mouse over screen elements for information.
Status
Public on Feb 11, 2008
Title
mouse-6 v1.1 (Illumina)
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Mus musculus Manufacturer
Illumina Inc.
Manufacture protocol
see manufacturer's website
Description
This platform represents the commercially-available Illumina mouse-6 v1.1 expression beadchip, but is not intended for general use.
Submission date
Dec 04, 2007
Last update date
Feb 10, 2009
Contact name
GEO admin
E-mail(s)
[email protected] Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (208)
GSM246424 , GSM246425 , GSM246426 , GSM246427 , GSM246428 , GSM246429
GSM246430 ,
GSM246431 ,
GSM246432 ,
GSM246433 ,
GSM246434 ,
GSM246435 ,
GSM246436 ,
GSM246437 ,
GSM246438 ,
GSM246439 ,
GSM246440 ,
GSM246441 ,
GSM427257 ,
GSM427258 ,
GSM427259 ,
GSM427260 ,
GSM427261 ,
GSM427262 ,
GSM427266 ,
GSM427267 ,
GSM427268 ,
GSM451699 ,
GSM451700 ,
GSM451701 ,
GSM451702 ,
GSM451703 ,
GSM451704 ,
GSM451705 ,
GSM451706 ,
GSM451707 ,
GSM451708 ,
GSM451709 ,
GSM451710 ,
GSM451711 ,
GSM451712 ,
GSM451713 ,
GSM451714 ,
GSM451715 ,
GSM451716 ,
GSM451717 ,
GSM451718 ,
GSM451719 ,
GSM451720 ,
GSM451721 ,
GSM451722 ,
GSM451723 ,
GSM451724 ,
GSM451725 ,
GSM451726 ,
GSM451727 ,
GSM451728 ,
GSM451729 ,
GSM451730 ,
GSM451731 ,
GSM451732 ,
GSM451733 ,
GSM451734 ,
GSM451735 ,
GSM451736 ,
GSM451737 ,
GSM451738 ,
GSM451739 ,
GSM451740 ,
GSM451741 ,
GSM451742 ,
GSM451743 ,
GSM451744 ,
GSM451745 ,
GSM451746 ,
GSM451747 ,
GSM451748 ,
GSM451749 ,
GSM451750 ,
GSM451751 ,
GSM451752 ,
GSM451753 ,
GSM451754 ,
GSM451755 ,
GSM451756 ,
GSM451757 ,
GSM451758 ,
GSM451759 ,
GSM451760 ,
GSM451761 ,
GSM451762 ,
GSM451763 ,
GSM451764 ,
GSM451765 ,
GSM451766 ,
GSM451767 ,
GSM451768 ,
GSM451769 ,
GSM451770 ,
GSM451771 ,
GSM451772 ,
GSM451773 ,
GSM451774 ,
GSM451775 ,
GSM451776 ,
GSM451777 ,
GSM451778 ,
GSM451779 ,
GSM451780 ,
GSM451781 ,
GSM451782 ,
GSM451783 ,
GSM451784 ,
GSM451785 ,
GSM451786 ,
GSM451787 ,
GSM451788 ,
GSM451789 ,
GSM451790 ,
GSM451791 ,
GSM451792 ,
GSM451793 ,
GSM451794 ,
GSM451795 ,
GSM451796 ,
GSM451797 ,
GSM451798 ,
GSM537314 ,
GSM537315 ,
GSM537316 ,
GSM537317 ,
GSM537318 ,
GSM537319 ,
GSM537324 ,
GSM537325 ,
GSM537326 ,
GSM537327 ,
GSM537328 ,
GSM537329 ,
GSM544515 ,
GSM544516 ,
GSM544517 ,
GSM544518 ,
GSM544519 ,
GSM544520 ,
GSM544521 ,
GSM544522 ,
GSM544523 ,
GSM544524 ,
GSM544525 ,
GSM559257 ,
GSM559258 ,
GSM559259 ,
GSM559260 ,
GSM559261 ,
GSM559262 ,
GSM559263 ,
GSM559264 ,
GSM559265 ,
GSM559266 ,
GSM559267 ,
GSM559268 ,
GSM559269 ,
GSM559270 ,
GSM559271 ,
GSM559272 ,
GSM588298 ,
GSM588299 ,
GSM588300 ,
GSM588301 ,
GSM588302 ,
GSM588303 ,
GSM588304 ,
GSM588305 ,
GSM588306 ,
GSM588307 ,
GSM588308 ,
GSM588309 ,
GSM616022 ,
GSM616023 ,
GSM616024 ,
GSM616025 ,
GSM616026 ,
GSM616027 ,
GSM616028 ,
GSM616029 ,
GSM616030 ,
GSM616031 ,
GSM616032 ,
GSM616033 ,
GSM626970 ,
GSM626971 ,
GSM626972 ,
GSM626973 ,
GSM626974 ,
GSM626975 ,
GSM5567871 ,
GSM5567872 ,
GSM5567873 ,
GSM5567874 ,
GSM5567875 ,
GSM5567876 ,
GSM5567877 ,
GSM5567878 ,
GSM5567879 ,
GSM5567880 ,
GSM5567881 ,
GSM5567882 Series (13)
GSE9535 Identifying targets of Klf2, Klf4, Klf5 and p53 in mouse embryonic stem cells
GSE9775 RNAi expression experiments on Illumina BeadChip
GSE17081 KLF17 is a negative regulator of epithelial-mesenchymal transition and metastasis in breast cancer
GSE18067 Expression profiles of four hematopoietic cell types isolated from the bone marrow of BXD recombinant inbred mice.
GSE21507 Constitutively active Stat3 in mouse embryonic fibroblasts (MEFs)
GSE21509 Changes in bone marrow resident monocyte gene expression upon induction of ischemia
GSE21896 Gene expression in LSK cells of C57B/L6, DBA/2J, B.D(Chr5), & D.B(Chr5) mice
GSE22486 Defining the Myb Transcriptional Program Controlled by via Genome-wide Chromatin Occupancy and Expression Analyses
GSE23860 Regulation of gene expression by ATF2 in mouse melanocytes
GSE25080 Genes regulated by HoxA3 in endothelial and hematopoietic progenitors
GSE25096 HoxA3 is an apical regulator of hemogenic endothelium
GSE25501 Sox10 controls migration of melanoma cells through multiple regulatory target genes
GSE183694 HIF-1 Dependent Genes in ER-negative PyMT Mammary Tumor Cells
Relations Alternative to
GPL6105 (official)
Data table header descriptions ID Unique identifier for the probe (across all products and species)
Search_key Internal id useful for custom design array
ProbeId Gid Transcript Internal transcript id
GB_ACC Genbank accession number
Symbol Gene symbol from the source database
Type Start SEQUENCE Probe sequence
Definition Gene description from the source
Ontology Synonym SPOT_ID
Data table ID Search_key ProbeId Gid Transcript GB_ACC Symbol Type Start SEQUENCE Definition Ontology Synonym SPOT_ID GI_38090455-S
GI_38090455
105290026
GI_38090455
GI_38090455
XM_356462.1 LOC382362
S
760
GATGGTGACCGTCTTATCACAGAACCTCTGCCGGAACTACAGCTGGTGGA
Mus musculus similar to heparan sulfate (glucosamine) 3-O-sulfotransferase 5; heparan sulfate 3-OST-5 (LOC382362), mRNA.
scl0011717.2_283-S
scl0011717.2_283
610369
GI_6753047
scl0011717.2_283
NM_009667.1 Ampd3
S
1979
ACCGATGACCCCATGCAGTTTCACTACACAAAGAAGCGCTCATGGAGGAG
Mus musculus AMP deaminase 3 (Ampd3), mRNA.
go_function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines [goid 0016814] [evidence IEA]; go_function: AMP deaminase activity [goid 0003876] [evidence IEA]; go_function: hydrolase activity [goid 0016787] [evidence IEA]; go_function: deaminase activity [goid 0019239] [evidence IEA]; go_process: nucleotide metabolism [goid 0009117] [evidence IEA]; go_process: purine ribonucleoside monophosphate biosynthesis [goid 0009168] [evidence IEA]
scl52892.1.1_103-S
scl52892.1.1_103
1450014
GI_31342363
scl52892.1.1_103
NM_176907.2 D830016O14Rik
S
1919
GGTGTCTTTAACAAATCCCTCCAAAGTGAGCTTAATTTGACAAACATGGA
Mus musculus RIKEN cDNA D830016O14 gene (D830016O14Rik), mRNA.
scl0012946.2_3-S
scl0012946.2_3
380019
GI_7304978
scl0012946.2_3
NM_013499.1 Crry
S
400
CGGAACCCAGCGCCATTTCTGGGTGGGACTGCTTTCTACACCATTTGCCG
Mus musculus complement receptor related protein (Crry), mRNA.
go_function: receptor activity [goid 0004872] [evidence IEA]; go_process: negative regulation of complement activation [goid 0045916] [evidence IMP] [pmid 10642554]
Mcp;mCRY
scl18939.11_88-S
scl18939.11_88
100430441
GI_6681286
scl18939.11_88
NM_007914 Ehf
S
17
CCACCCTACAGACTAAATGTTGTAACAGAACATGGACAGCTTTGGTATCT
Mus musculus ets homologous factor (Ehf), mRNA.
go_component: nucleus [goid 0005634] [evidence ISS] [pmid 12466851]; go_function: DNA binding [goid 0003677] [evidence ISS] [pmid 12466851]; go_function: transcription factor activity [goid 0003700] [evidence ISS] [pmid 12466851]; go_process: regulation of transcription, DNA-dependent [goid 0006355] [evidence ISS] [pmid 12466851]
9030625L19Rik
scl45217.22.1_37-S
scl45217.22.1_37
610088
GI_39930442
scl45217.22.1_37
NM_028315.1 2810028N01Rik
S
2884
CTCAACAGCAACAAAATGGAGAGCATACTTACAGACTCCTGTGCGATAGC
Mus musculus RIKEN cDNA 2810028N01 gene (2810028N01Rik), mRNA.
go_function: RNA binding [goid 0003723] [evidence ISS] [pmid 12466851]; go_function: ribonuclease activity [goid 0004540] [evidence ISS] [pmid 12466851]
scl056379.2_58-S
scl056379.2_58
870181
GI_31543034
scl056379.2_58
NM_019659 Kcnj1
S
2732
CCTGGAGTGTGTATGATGCTAACACCGAATGGTTCTTGTGTTTCTCTGCC
Mus musculus potassium inwardly-rectifying channel, subfamily J, member 1 (Kcnj1), mRNA.
go_component: membrane [goid 0016020] [evidence IEA]; go_component: integral to membrane [goid 0016021] [evidence TAS] [pmid 12466851]; go_function: voltage-gated ion channel activity [goid 0005244] [evidence IEA]; go_function: ion channel activity [goid 0005216] [evidence IEA]; go_function: inward rectifier potassium channel activity [goid 0005242] [evidence IEA]; go_function: potassium channel activity [goid 0005267] [evidence IEA]; go_function: ATP binding [goid 0005524] [evidence IEA]; go_process: potassium ion transport [goid 0006813] [evidence IEA]; go_process: ion transport [goid 0006811] [evidence IEA]
ROMK-2;Romk2
ri|D130099D04|PX00187M10|AK051805|1507-S
ri|D130099D04|PX00187M10|AK051805|1507
103060390
ri|D130099D04|PX00187M10|AK051805|1507
AK051805 D130099D04Rik
S
1191
GCTCAGGGCCAGGGTCAGGGTCAGAGTGAGGGTCAATTTCGGTTCTGGTT
BRAIN AND HEART SODIUM CHANNEL BETA 3 SUBUNIT homolog [Mus musculus]
go_component: integral to membrane [goid 0016021] [evidence: IEA]; go_component: membrane fraction [goid 0005624] [evidence: IEA]; go_function: voltage-gated sodium channel activity [goid 0005248] [evidence: IEA]; go_process: ion transport [goid 0006811] [evidence: IEA]; go_process: sodium ion transport [goid 0006814] [evidence: IEA]
scl0018933.1_65-S
scl0018933.1_65
4480390
GI_6755115
scl0018933.1_65
NM_011127.1 Prrx1
S
633
CTCAAGTCCTACTCAGGAGACGTGACTGCTGTGGAGCAACCCATCGTACC
Mus musculus paired related homeobox 1 (Prrx1), mRNA.
go_component: nucleus [goid 0005634] [evidence IEA]; go_component: transcription factor complex [goid 0005667] [evidence IEA]; go_function: transcription factor activity [goid 0003700] [evidence IEA]; go_function: DNA binding [goid 0003677] [evidence IEA]; go_process: regulation of transcription, DNA-dependent [goid 0006355] [evidence IEA]; go_process: development [goid 0007275] [evidence ISS] [pmid 12466851]
A230024N07Rik;K-2;mHox;Pmx1;Prx1
GI_38083244-S
GI_38083244
102810300
GI_38083244
GI_38083244
XM_355038.1 LOC381122
S
2628
CAGGAAGCCTCTGGGGTGGGAATGGGTATAAGAACCAAGGAGCAGAGACG
Mus musculus similar to hypothetical protein (LOC381122), mRNA.
ri|4930440J04|PX00031E04|AK015349|1361-S
ri|4930440J04|PX00031E04|AK015349|1361
103290520
ri|4930440J04|PX00031E04|AK015349|1361
AK015349 Ppp1r2
S
437
AGATTAGCATGCTGCTCGAAGGCTCAGCAGCCAATAGTATCGGGACTCAG
protein phosphatase 1, regulatory (inhibitor) subunit 2
go_process: glycogen metabolism [goid 0005977] [evidence: IEA]
0610025N14Rik;2310007G06Rik;4930440J04Rik;5430408E15Rik;D16Ertd248e;IPP-2
ri|A430065A10|PX00137F11|AK040115|1649-S
ri|A430065A10|PX00137F11|AK040115|1649
101940014
ri|A430065A10|PX00137F11|AK040115|1649
AK040115 Cd4
S
1440
ACAGAGGTTGGAGATAGAAGTGAGGAGAGAGAGGGGTCCTGGGCTCTAGG
CD4 antigen
go_component: integral to membrane [goid 0016021] [evidence: IEA]; go_component: plasma membrane [goid 0005886] [evidence: IEA]; go_component: membrane [goid 0016020] [evidence: IEA]; go_function: lymphocyte antigen [goid 0005557] [evidence: IEA]; go_function: major histocompatibility complex antigen [goid 0003819] [evidence: IEA]; go_process: immune response [goid 0006955] [evidence: IEA]; go_process: defense response [goid 0006952] [evidence: IEA]
L3T4;Ly-4
ri|C130038A22|PX00168H22|AK048157|3740-S
ri|C130038A22|PX00168H22|AK048157|3740
104850707
ri|C130038A22|PX00168H22|AK048157|3740
AK048157 Nbea
S
3681
CCAACTCAGCATTTGTTGGTGCACCACTACAGTGTGCATTGCACATAGAG
Mus musculus neurobeachin (Nbea), mRNA.
GI_38078125-S
GI_38078125
102100279
GI_38078125
GI_38078125
XM_357368.1 LOC384001
S
318
TCTTCAGCTGACAGCAGCAAAGCCAGTTGATTGGAAGAAGGGGGAGAGCA
Mus musculus similar to nonselenium glutathione peroxidase (LOC384001), mRNA.
scl51299.12_342-S
scl51299.12_342-S
4280215
GI_6755273
scl51299.12_342
NM_011972.1 Poli
S
2233
TCGGCGCACAGATAAGTCCAGAAAGCCAGGGAGTATGAGTCCCCAGGTCG
Mus musculus polymerase (DNA directed), iota (Poli), mRNA.
go_process: DNA repair [goid 0006281] [evidence ISS] [pmid 12466851]
Rad30b
scl16688.3.1_211-S
scl16688.3.1_211
4610433
GI_20848024
scl16688.3.1_211
XM_129823.1 4933402D24Rik
S
1675
GAGTGAGACTGAGCCTCTCACTAACGGTTTGGGATATAAAATTCCTTGGA
Mus musculus RIKEN cDNA 4933402D24 gene (4933402D24Rik), mRNA.
scl31044.8_330-S
scl31044.8_330
2230451
GI_27229170
scl31044.8_330
NM_028729.1 4632434I11Rik
S
2112
TTGCAGTAGCCCAGAAAGTATAAATACATCGAAAGAGATGCCTTGCAGGC
Mus musculus RIKEN cDNA 4632434I11 gene (4632434I11Rik), mRNA.
go_function: electron transporter activity [goid 0005489] [evidence ISS] [pmid 12466851]; go_process: electron transport [goid 0006118] [evidence ISS] [pmid 12466851]
scl22986.2.29_3-S
scl22986.2.29_3
5360687
GI_46518492
scl22986.2.29_3
NM_138679.2 Ash1l
S
4158
GCACAAATTGTAGCCCTACTCGTAAAAGGTCTTCATCTGAGAGTACTTCT
Mus musculus ash1 (absent, small, or homeotic)-like (Drosophila) (Ash1l), mRNA.
go_component: cellular_component unknown [goid 0008372] [evidence ND]; go_function: DNA binding [goid 0003677] [evidence ISS] [pmid 12466851]; go_process: regulation of transcription, DNA-dependent [goid 0006355] [evidence ISS] [pmid 12466851]
8030453L17Rik;Ash1;E430018P19Rik
scl24344.15.1_2-S
scl24344.15.1_2
450537
GI_19072791
scl24344.15.1_2
NM_029572.1 Txndc4
S
20
GGATCGAGATGAGCTGTAAAAACTCAAGAATACTGCAAGCCTTTCCACAC
Mus musculus thioredoxin domain containing 4 (endoplasmic reticulum) (Txndc4), mRNA.
go_component: endoplasmic reticulum lumen [goid 0005788] [evidence ISS] [pmid 11847130]; go_component: extracellular space [goid 0005615] [evidence TAS] [pmid 12466851]; go_component: endoplasmic reticulum [goid 0005783] [evidence IEA]; go_function: molecular_function unknown [goid 0005554] [evidence ND] [pmid 11847130]; go_function: electron transporter activity [goid 0005489] [evidence ISS] [pmid 12466851]; go_function: chaperone activity [goid 0003754] [evidence IEA]; go_process: response to unfolded protein [goid 0006986] [evidence ISS] [pmid 11847130]; go_process: electron transport [goid 0006118] [evidence ISS] [pmid 12466851]
1110001E24Rik;Erp44
scl0018044.2_32-S
scl0018044.2_32
5860368
GI_6754847
scl0018044.2_32
NM_010913.1 Nfya
S
2135
GAATCCTTATATTGCCTGAAGAAGCACTGTTGAGCTAGCTGTCTTGGCTG
Mus musculus nuclear transcription factor-Y alpha (Nfya), mRNA.
go_component: nucleus [goid 0005634] [evidence IDA] [pmid 12659851]; go_component: nucleus [goid 0005634] [evidence IDA] [pmid 12730328]; go_function: DNA binding [goid 0003677] [evidence IDA] [pmid 12730328]; go_function: protein binding [goid 0005515] [evidence IPI] [pmid 12730328]; go_function: transcription factor activity [goid 0003700] [evidence IDA] [pmid 12659851]; go_function: transcriptional activator activity [goid 0016563] [evidence IDA] [pmid 12659851]; go_function: transcriptional activator activity [goid 0016563] [evidence IDA] [pmid 12730328]; go_process: regulation of transcription, DNA-dependent [goid 0006355] [evidence IEA]; go_process: regulation of transcription from Pol II promoter [goid 0006357] [evidence IDA] [pmid 12730328]; go_process: positive regulation of transcription from Pol II promoter [goid 0045944] [evidence IDA] [pmid 12659851]
Cbf-b;SEZ-10;SEZ10
46628 16831 Kbytes .Supplementary data files not provided
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