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Sample GSM467962 Query DataSets for GSM467962
Status Public on Jun 30, 2011
Title OsPDCD-3C5A
Sample type RNA
 
Channel 1
Source name 24-day-old Zhonghua 11 seedlings, heat-shocked
Organism Oryza sativa
Characteristics age: 24-day-old seedlings
cultivar: Zhonghua 11
Growth protocol seedlings were grown in half-strength Murashige and Skoog medium under a 16/8 h light/dark cycle at 26°C, heat-shocked for 6 h
Extracted molecule total RNA
Extraction protocol QIAGEN RNeasy® Mini Kit
Label Cy3
Label protocol Low RNA inout Lineat Amplification/Labeling Kit (Agilent)
 
Channel 2
Source name 24-day-old Zhonghua 11 seedlings, untreated
Organism Oryza sativa
Characteristics age: 24-day-old seedlings
cultivar: Zhonghua 11
Growth protocol seedlings were grown in half-strength Murashige and Skoog medium under a 16/8 h light/dark cycle at 26°C
Extracted molecule total RNA
Extraction protocol QIAGEN RNeasy® Mini Kit
Label Cy5
Label protocol Low RNA inout Lineat Amplification/Labeling Kit (Agilent)
 
 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Agilent Technologies Scanner G2505C
Description 4µg RNAs were labeled and 1µg of Cy3- and Cy5-labeled cRNAs were used.
Data processing Data was analyzed by Feature Extraction software (Agilent)
 
Submission date Nov 04, 2009
Last update date Jun 30, 2011
Contact name Fan Sun
E-mail(s) [email protected]
Phone +8602165643715
Fax +8602165643715
Organization name Fudan University
Street address 220 Handan Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platform ID GPL8852
Series (1)
GSE18900 Investigating the role of OsPDCD5 in rice programmed cell death by inducible expression

Data table header descriptions
ID_REF
VALUE log2 ratio (heat-shocked/untreated)
flags flags

Data table
ID_REF VALUE flags
Os01g0532600|mRNA|AJ491820|CDS+3'UTR -0.52586937 P
Os01g0721700|COMBINER_EST|CI557169|4 1.5286511 P
Os06g0215600|mRNA|AK104039|CDS+3'UTR -0.05476953 P
Os09g0379500|mRNA|AK069390|CDS+3'UTR -0.43298325 A
Os03g0199100|mRNA|AK069890|CDS+3'UTR -0.77690876 P
Os01g0508500|mRNA|AK120501|CDS+3'UTR -1.874113 P
Os06g0130000|mRNA|AK064427|CDS+3'UTR 0.078579046 P
Os08g0446400|mRNA|AK102368|5'UTR+CDS -2.2655761 A
Os05g0433800|COMBINER_EST|Os05g0433800|8 1.824226 A
Os12g0152700|mRNA|AK099473|CDS+3'UTR 0.39810368 P
Os03g0685100|mRNA|AK059852|CDS+3'UTR 0.88406575 P
Os05g0285900|mRNA|AK061533|CDS+3'UTR 0.04489051 P
Os03g0449000|COMBINER|CI260116|6 3.7884476 P
Os03g0775000|COMBINER_EST|AU057613|7 -0.6799306 P
Os11g0213500|COMBINER_EST|Os11g0213500|8 0.4355548 A
Os09g0261100|mRNA|AK121607|CDS+3'UTR -0.082316436 P
Os02g0236600|COMBINER_EST|CI552267|0 -2.7870579 P
Os10g0469200|mRNA|AK108708|CDS+3'UTR 0.10412409 P
Os02g0827200|mRNA|AY137242|CDS+3'UTR -0.6713648 P
Os09g0271000|mRNA|AK102955|CDS+3'UTR -0.5196088 A

Total number of rows: 42475

Table truncated, full table size 2056 Kbytes.




Supplementary file Size Download File type/resource
GSM467962.txt.gz 14.4 Mb (ftp)(http) TXT
Processed data included within Sample table
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