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Sample GSM514 Query DataSets for GSM514
Status Public on Jul 30, 2001
Title trpR2tnaA2,W3110 minimal +Trp 50ug/ml vs. dnaC genomic DNA
Sample type RNA
 
Channel 1
Source name dnaC genomic DNA, Sau3A, 2 ug
Organism Escherichia coli
Extracted molecule total RNA
 
Channel 2
Source name trpR2tnaA2,W3110 min +Trp 50ug/ml, 25 ug total RNA
Organism Escherichia coli
Extracted molecule total RNA
 
 
Description Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = b2_gmc
 
Submission date Jul 30, 2001
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL17
Series (1)
GSE7 Tryptophan metabolism response in E. coli

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 47 36 315 715 681 46 34 62 1238 1300 .653 0 1.975 4.036 81 84 .463 .254 2.162 3.931 .675 1260 208 68 84 127 143
2 49 36 271 663 624 54 39 71 1135 1205 .642 0 2.066 3.391 77 79 .434 .239 2.303 4.187 .787 1181 208 68 84 149 165
3 39 36 238 520 480 43 40 73 873 945 .918 0 1.875 2.053 71 77 .496 .273 2.017 3.667 1.473 1198 208 68 84 172 188
4 37 35 354 684 645 39 39 71 1173 1244 .739 0 1.728 2.424 78 83 .549 .302 1.822 3.313 .766 1165 208 69 85 194 210
5 39 37 352 665 624 42 41 75 1135 1209 .691 0 1.688 2.825 77 82 .564 .31 1.773 3.223 .549 1197 208 69 85 216 232
6 39 38 557 848 808 41 40 73 1469 1542 .776 0 1.399 1.967 80 81 .689 .379 1.451 2.638 .712 1164 208 69 85 240 256
7 39 38 3 41 3 39 38 69 5 75 .043 0 .862 .714 16 11 1 .55 1 1.818 .031 1153 208 69 85 260 276
8 40 39 2 44 4 42 40 73 7 80 -.073 0 1.862 1 15 10 .5 .275 2 3.636 -.053 1173 208 70 86 282 298
9 40 38 3 46 3 45 43 78 5 84 .073 0 .862 .903 18 8 1 .55 1 1.818 .058 1161 208 70 86 304 320
10 40 39 47 1 46 46 84 2 85 .125 0 .875 12 5 .09 1129 208 70 86 326 342
11 42 40 46 2 45 44 80 4 84 .114 0 .615 9 6 .091 1158 208 71 87 348 364
12 47 41 36 49 40 73 -7 65 -.098 0 .5 8 4 -.07 1188 208 71 87 371 387
13 49 40 35 55 38 69 -5 64 .026 0 .615 3 2 .021 1164 208 71 87 393 409
14 41 37 1 36 44 37 67 -2 65 .067 0 .8 16 5 .048 1188 208 71 87 415 431
15 41 39 2 37 41 40 73 -5 67 .145 0 .68 12 2 .101 1158 208 72 88 437 453
16 43 41 1 48 4 45 44 80 7 87 .081 0 2.862 1.5 11 5 .25 .138 4 7.273 .066 1158 208 72 88 459 475
17 41 38 3 46 3 44 43 78 5 84 -.154 0 .862 .933 15 9 1 .55 1 1.818 -.133 1165 208 72 88 481 497
18 40 38 2 40 1 39 39 71 2 73 -.033 0 -.138 .609 17 5 2 1.1 .5 .909 -.021 1299 208 72 88 503 519
19 58 37 2 34 46 35 64 -2 62 .115 0 .8 16 3 .079 1171 208 90 106 127 143
20 64 38 40 51 40 73 0 73 .047 0 1 9 4 .038 1075 208 90 106 149 165

Total number of rows: 4896

Table truncated, full table size 546 Kbytes.




Supplementary data files not provided
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