NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM536 Query DataSets for GSM536
Status Public on Jul 30, 2001
Title tnaA2trpR2 vs. tnaA2, W3110 min +Trp 50ug/ml
Sample type RNA
 
Channel 1
Source name tnaA2,W3110 min +Trp 50ug/ml, 30 ug total
Organism Escherichia coli
Extracted molecule total RNA
 
Channel 2
Source name tnaA2trpR2, W3110 min +Trp 50ug/ml, 30 ug total
Organism Escherichia coli
Extracted molecule total RNA
 
 
Description Category: Amino Acid metabolism
Subcategory: Tryptophan
Scanning Software: ScanAlyze
Software version: 2.24
Scanning parameters:
Lot batch = cy_ba2
 
Submission date Jul 30, 2001
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) [email protected]
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL17
Series (1)
GSE7 Tryptophan metabolism response in E. coli

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 56 54 358 556 470 86 86 69 379 448 .935 0 .082 1.234 80 76 .762 .945 1.313 1.059 1.219 1276 208 110 126 63 79
2 56 55 542 827 742 85 85 69 598 667 .924 0 .143 1.359 80 82 .73 .906 1.369 1.104 1.204 1164 208 110 126 85 101
3 57 55 424 695 608 88 87 70 490 560 .936 0 .21 1.407 76 78 .697 .865 1.434 1.156 1.256 1158 208 110 126 107 123
4 59 57 268 467 376 92 91 73 303 377 .86 0 .178 1.353 75 75 .713 .884 1.403 1.131 1.12 1158 208 110 126 129 145
5 58 56 196 349 255 95 94 76 206 281 .871 0 .069 1.25 73 73 .769 .953 1.301 1.049 1.078 1204 208 110 126 151 167
6 59 56 205 361 266 96 95 77 215 291 .911 0 .065 1.322 66 63 .771 .956 1.298 1.046 1.105 1178 208 109 125 176 192
7 57 56 2 95 1 94 94 76 1 77 -.101 0 -1.31 .704 13 1 2 2.48 .5 .403 -.088 1143 208 109 125 195 211
8 57 56 1 91 93 93 75 -2 73 -.126 0 .857 8 0 -.101 1175 208 109 125 218 234
9 58 56 1 93 1 93 92 74 1 75 -.102 0 -.31 1.031 10 0 1 1.24 1 .806 -.087 1155 208 109 125 240 256
10 58 56 3 90 91 90 73 0 73 .112 0 .75 12 0 .094 1158 208 109 125 262 278
11 59 56 2 88 91 89 72 -1 71 .144 0 .714 13 1 .115 1151 208 109 125 284 300
12 59 55 5 89 2 90 87 70 2 72 .058 0 -1.632 .838 11 0 2.5 3.1 .4 .323 .051 1164 208 108 124 306 322
13 59 55 1 84 87 84 68 0 68 .015 0 .75 10 0 .011 1165 208 108 124 328 344
14 56 54 80 1 81 79 64 1 65 .165 0 .75 12 2 .098 1181 208 108 124 350 366
15 54 52 2 78 79 78 63 0 63 .05 0 .765 11 0 .038 1174 208 108 124 373 389
16 54 52 3 79 80 79 64 0 64 -.041 0 .727 10 1 -.033 1151 208 108 124 395 411
17 53 52 1 79 1 78 78 63 1 64 .083 0 -.31 .636 10 2 1 1.24 1 .806 .064 1164 208 107 123 417 433
18 54 53 2 78 3 75 75 60 2 63 .105 0 .275 .875 12 2 .667 .827 1.5 1.21 .084 1283 208 107 123 439 455
19 56 54 2 84 86 84 68 0 68 .033 0 .714 13 1 .026 1195 208 133 149 63 79
20 59 56 2 83 92 86 69 -2 67 .021 0 .615 13 0 .015 1084 208 132 148 85 101

Total number of rows: 4896

Table truncated, full table size 546 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap